Browse Element(s) Details


OsAffx.27611.1.S1_at

Description tigr:9634.m01333
TID=OsAffx.27611.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1342011/11hypothetical protein
LOC_Os06g075901/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13370OsAffx.25936.2.S1_x_at1/116+7362153..7365160transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g13370OsAffx.25936.5.S1_x_at1/116+7362153..7365160transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g13380NANA6+7366792..7367196hypothetical protein
LOC_Os06g13390OsAffx.15407.1.S1_at11/116+7368205..7369766SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13399NANA6+7372075..7372597NA
LOC_Os06g13410OsAffx.4827.1.S1_at11/116+7375287..7375933hypothetical protein
LOC_Os06g13420OsAffx.27611.1.S1_at11/116+7377699..7379891hypothetical protein
LOC_Os06g13430NANA6+7387963..7392345retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g13440OsAffx.4828.1.S1_at11/116+7396013..7396463hypothetical protein
LOC_Os06g13450OsAffx.15408.1.S1_at10/116+7400128..7403268Cys/Met metabolism PLP-dependent enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27611.1.S1_at--319--8451Chr06:7379098..7379122 (25 bp)
TGGCCGTCACAGAGTCGTCCTCCAG
LOC_Os06g13420
OsAffx.27611.1.S1_at--171--5651Chr06:7379055..7379075 (21 bp)
GACAGGATCGAGGTGCTACAGTTTT
LOC_Os06g13420
OsAffx.27611.1.S1_at--946--2091Chr06:7378119..7378191 (25 bp)
ACATCTCTTTGTAGGCGAGGCCGAC
LOC_Os06g13420
OsAffx.27611.1.S1_at--1088--10791Chr06:7378039..7378063 (25 bp)
TTGTCTGCTCGTCAATCCGGTACGG
LOC_Os06g13420
OsAffx.27611.1.S1_at--365--8891Chr06:7377952..7377976 (25 bp)
TGAGGTGGCCACCAGTGTTATCGCA
LOC_Os06g13420
OsAffx.27611.1.S1_at--394--3991Chr06:7377889..7377913 (25 bp)
CGTCATGCCGTTCCCGACGATGTCA
LOC_Os06g13420
OsAffx.27611.1.S1_at--14--5531Chr06:7377794..7377818 (25 bp)
GAAAACTATCTCACCTCTTTTATCC
LOC_Os06g13420
OsAffx.27611.1.S1_at--85--9651Chr06:7377784..7377808 (25 bp)
TCACCTCTTTTATCCCTGGAAATAA
LOC_Os06g13420
OsAffx.27611.1.S1_at--17--9773Chr07:5107142..5107161 (20 bp)
TAATGCGACCGGTGTTCTACGGCCA
NONE
OsAffx.27611.1.S1_at--689--6711Chr06:7377741..7377765 (25 bp)
GTTCTACGGCCAATTATACGCATTT
LOC_Os06g13420
OsAffx.27611.1.S1_at--57--171Chr06:7377729..7377753 (25 bp)
ATTATACGCATTTTTAGTGTCCATT
LOC_Os06g13420
Target Sequence 
TGGCCGTCACAGAGTCGTCCTCCAGCGCCGCGCAGGCTTCCGTCGAGGACAGGATCGAGGTGCTACAGTTTTCTCTTAGT
TTGTCTATCTTTCTCGGTTTGCGCCGTAAACCGTTCGCCACCGCTGCGAGAGTGCGACATCTCTTTGTAGGCGAGGCCGA
CGGCGGCTCCACTACGTCGTCCAAGGCGCCCCTCCTCCTCTGGCTCAACGGTGGCCTTGTCTGCTCGTCAATCCGGTACG
GCGCCATGGAGGAGCTCGGCCCGTTCCACGTCAAGAGCGACGGCGAGACGCTCAGCGCGAGGATGAGGTGGCCACCAGTG
TTATCGCACCACGTCGTGCTGACCTCGCCCCACTGCTCTCTGAGGCCGTCATGCCGTTCCCGACGATGTCAACGGGAAGG
GGGAAAAGAAGAAAGGAGAAGGAGAAAAAGAAGGAAAGAGAAGGGGCAATCCGGGTATTTAGAAAACTATCTCACCTCTT
TTATCCCTGGAAATAATAAAATAATGCGACCGGTGTTCTACGGCCAATTATACGCATTTTTAGTGTCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27611.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis