Browse Element(s) Details


OsAffx.27612.1.S1_at

Description tigr:9634.m01338
TID=OsAffx.27612.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=58431-59672
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1347011/11SAM dependent carboxyl methyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13430NANA6+7387963..7392345retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g13440OsAffx.4828.1.S1_at11/116+7396013..7396463hypothetical protein
LOC_Os06g13450OsAffx.15408.1.S1_at10/116+7400128..7403268Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os06g13460Os.52964.1.S1_at11/116+7405038..7407610Jasmonate O-methyltransferase, putative, expressed
LOC_Os06g13470OsAffx.27612.1.S1_at11/116+7416745..7421148SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13480OsAffx.27613.1.S1_at11/116+7422690..7423046hypothetical protein
LOC_Os06g13490OsAffx.15409.1.S1_at11/116+7428731..7432792SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13500NANA6+7438413..7442219retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009611biological_processresponse to wounding
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27612.1.S1_at--543--9931Chr06:7419115..7419139 (25 bp)
TACGGATTAATCTCACAAGCATTGC
LOC_Os06g13470
OsAffx.27612.1.S1_at--781--5691Chr06:7418529..7418553 (25 bp)
GACTCCTTCAACATTCCAAATTACG
LOC_Os06g13470
OsAffx.27612.1.S1_at--647--10471Chr06:7418509..7418533 (25 bp)
TTACGAGCCATCTATCCATGAAGTC
LOC_Os06g13470
OsAffx.27612.1.S1_at--1070--9851Chr06:7418439..7418463 (25 bp)
TACGTCTTTGAGTCGAACTGGGATC
LOC_Os06g13470
OsAffx.27612.1.S1_at--813--7971Chr06:7418419..7418443 (25 bp)
GGATCCTTATGACGACTCATCAGAT
LOC_Os06g13470
OsAffx.27612.1.S1_at--424--4011Chr06:7418350..7418374 (25 bp)
CGTCGCCAAGTGCATTAGAGCTGTG
LOC_Os06g13470
OsAffx.27612.1.S1_at--544--10031Chr06:7418335..7418359 (25 bp)
TAGAGCTGTGCTTGAGCCGTTGATC
LOC_Os06g13470
OsAffx.27612.1.S1_at--302--4511Chr06:7418320..7418344 (25 bp)
GCCGTTGATCGCTAGCCATTTTGGA
LOC_Os06g13470
OsAffx.27612.1.S1_at--330--451Chr06:7418293..7418317 (25 bp)
ATCTATACTAGACGTGCTCTTCTCT
LOC_Os06g13470
OsAffx.27612.1.S1_at--486--9091Chr06:7418283..7418303 (21 bp)
TGCTCTTCTCTAGGTTCGCACATTA
LOC_Os06g13470
OsAffx.27612.1.S1_at--709--2951Chr06:7417622..7417645 (24 bp)
AATGTCGTACCGATATCCGACCTAA
LOC_Os06g13470
Target Sequence 
TACGGATTAATCTCACAAGCATTGCAATCTCTAGTTATGGAGGGACTCGTGGAGAAGGAAAAGCTTGACTCCTTCAACAT
TCCAAATTACGAGCCATCTATCCATGAAGTCAAAACAGTGGTGATAAGCAGCAAGCTTTTCACCATCAACAAAATTTACG
TCTTTGAGTCGAACTGGGATCCTTATGACGACTCATCAGATCAAGGACAAGCAACTAATATTAATCCTATCAAGAGTGGC
TTGAACGTCGCCAAGTGCATTAGAGCTGTGCTTGAGCCGTTGATCGCTAGCCATTTTGGAGAATCTATACTAGACGTGCT
CTTCTCTAGGTTCGCACATTACGCCTCTATCAAGCCCACATTTAAGGAAACGAAATGTCGTACCGATATCCGACCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27612.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis