Browse Element(s) Details


OsAffx.27616.1.S1_at

Description tigr:9634.m01350
TID=OsAffx.27616.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1359011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13570Os.7255.1.S1_at11/116+7487067..7495669expressed protein
LOC_Os06g13570Os.7255.2.S1_at11/116+7487067..7495669expressed protein
LOC_Os06g13570Os.52782.1.S1_at1/116+7487067..7495669expressed protein
LOC_Os06g13580OsAffx.27615.2.S1_at11/116+7497332..7499518expressed protein
LOC_Os06g13590OsAffx.27616.1.S1_at11/116+7518620..7519481hypothetical protein
LOC_Os06g13600Os.7614.1.S1_at11/116+7529846..7533850HEAT repeat family protein, expressed
LOC_Os06g13610OsAffx.30187.1.S1_at11/116+7539775..7540865hypothetical protein
LOC_Os06g13620OsAffx.15410.1.S1_at11/116+7543707..7544168hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27616.1.S1_at--285--8371Chr06:7518885..7518909 (25 bp)
GGCGTTGCGTGGGTGGTCATGGGAA
LOC_Os06g13590
OsAffx.27616.1.S1_at--1128--9611Chr06:7518901..7518925 (25 bp)
TCATGGGAAAGCAGGTCGTTGTCGA
LOC_Os06g13590
OsAffx.27616.1.S1_at--1115--951Chr06:7518934..7518958 (25 bp)
AGGACGCAGGCGAACATGTCAGTGG
LOC_Os06g13590
OsAffx.27616.1.S1_at--1128--10011Chr06:7519009..7519033 (25 bp)
TAGACATGGGGGTACTCGAAGCGCA
LOC_Os06g13590
OsAffx.27616.1.S1_at--285--4871Chr06:7519049..7519073 (25 bp)
GCTAGGCGAGCTTGTTGCGGAGGAA
LOC_Os06g13590
OsAffx.27616.1.S1_at--833--7731Chr06:7519138..7519162 (25 bp)
GGTGTAGTAGGCGAGCACCTCGGTG
LOC_Os06g13590
OsAffx.27616.1.S1_at--1061--3511Chr06:7519339..7519363 (25 bp)
CATGCTCTCACCCATGCTCGTGTAG
LOC_Os06g13590
OsAffx.27616.1.S1_at--638--4331Chr06:7519350..7519374 (25 bp)
CCATGCTCGTGTAGCTGCTCAAGAA
LOC_Os06g13590
OsAffx.27616.1.S1_at--186--4811Chr06:7519354..7519378 (25 bp)
GCTCGTGTAGCTGCTCAAGAAAAGG
LOC_Os06g13590
OsAffx.27616.1.S1_at--1071--6051Chr06:7519402..7519426 (25 bp)
GAGTTGAGGCTGACACGCGGGTCCC
LOC_Os06g13590
OsAffx.27616.1.S1_at--509--1993Chr10:20857640..20857659 (20 bp)
ACTGCCATACACTCAGAATAGAGAT
NONE
Target Sequence 
GGCGTTGCGTGGGTGGTCATGGGAAAGCAGGTCGTTGTCGAGGGAGACGAGGACGCAGGCGAACATGTCAGTGGGGCCCG
GCTGTGGCGGCGAGGGCGGGATGAGAACGAGGAAGTAGGAAGGGTAGACATGGGGGTACTCGAAGCGCATGAGGAGGGCG
ATGAGCTAGGCGAGCTTGTTGCGGAGGAAGGGAGGGGAGGCCGTGGAGGCAGAGGTGGAGGAGCGACGATGGAGGGGTCT
CGTCGCGGGCGTGGGTGTAGTAGGCGAGCACCTCGGTGCGCACGGCCGGGAGGCGGGGGAATCAGAGGCGAGCAGGATGG
CCTGCTCGAGGTCATCCATGGCGGTGGCGGTGGTGGCGGAGGAATCTGGGCTGGGGCAGAGGGGGGAAAGGAAGAGAAGG
GAAGGGGAGGCAGAGTTGGGGGACCGCCGCCGCCACGGGGGACCGCCTCACCGCCATGCTCTCACCCATGCTCGTGTAGC
TGCTCAAGAAAAGGGGGAGAAAATTTGGAAGAACAAAGAGTTGAGGCTGACACGCGGGTCCCACTGCCATACACTCAGAA
TAGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27616.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis