Browse Element(s) Details


OsAffx.27626.1.S1_at

Description tigr:9631.m01944
TID=OsAffx.27626.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1963011/11Myb-like DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19590Os.4601.1.S1_a_at11/113+10998964..11007022Phytochrome B, putative, expressed
LOC_Os03g19600Os.11065.1.A1_at11/113+11009669..11011712retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g19600Os.8570.3.S1_s_at11/113+11009669..11011712retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g19610Os.18212.1.S1_at11/113+11012355..11014375Pectinesterase family protein, expressed
LOC_Os03g19620OsAffx.12939.2.S1_at11/113+11015747..11016130hypothetical protein
LOC_Os03g19630OsAffx.27626.1.S1_at11/113+11018627..11019196Myb-like DNA-binding domain containing protein
LOC_Os03g19640OsAffx.12941.1.S1_at11/113+11024800..11025308hypothetical protein
LOC_Os03g19650Os.26818.2.S1_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19650Os.26818.1.S1_a_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19650Os.26818.2.S2_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19660OsAffx.12942.2.S1_at11/113+11034988..11036603hypothetical protein
LOC_Os03g19660OsAffx.12942.3.S1_at10/113+11034988..11036603hypothetical protein
LOC_Os03g19660OsAffx.12942.3.S1_x_at8/113+11034988..11036603hypothetical protein
LOC_Os03g19670Os.51091.1.S1_at11/113+11038498..11040989GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27626.1.S1_at--810--1852Chr06:7791160..7791184 (25 bp)
ACGACGTGTTGATGAACTGTGGATG
NONE
OsAffx.27626.1.S1_at--934--8971Chr03:11018693..11018717 (25 bp)
TGAACTGTGGATGAGCGCGAGAGCT
LOC_Os03g19630
OsAffx.27626.1.S1_at--958--3791Chr03:11018670..11018694 (25 bp)
CTCGCGTCGTCGCACATTTGATCGA
LOC_Os03g19630
OsAffx.27626.1.S1_at--312--9331Chr03:11018669..11018693 (25 bp)
TCGCGTCGTCGCACATTTGATCGAC
LOC_Os03g19630
OsAffx.27626.1.S1_at--693--4651Chr03:11018667..11018691 (25 bp)
GCGTCGTCGCACATTTGATCGACGA
LOC_Os03g19630
OsAffx.27626.1.S1_at--963--7191Chr03:11018665..11018689 (25 bp)
GTCGTCGCACATTTGATCGACGATC
LOC_Os03g19630
OsAffx.27626.1.S1_at--293--7231Chr03:11018662..11018686 (25 bp)
GTCGCACATTTGATCGACGATCTGC
LOC_Os03g19630
OsAffx.27626.1.S1_at--924--9351Chr03:11018661..11018685 (25 bp)
TCGCACATTTGATCGACGATCTGCT
LOC_Os03g19630
OsAffx.27626.1.S1_at--810--5111Chr03:11018659..11018683 (25 bp)
GCACATTTGATCGACGATCTGCTCT
LOC_Os03g19630
OsAffx.27626.1.S1_at--929--3311Chr03:11018658..11018682 (25 bp)
CACATTTGATCGACGATCTGCTCTT
LOC_Os03g19630
OsAffx.27626.1.S1_at--247--2091Chr03:11018657..11018681 (25 bp)
ACATTTGATCGACGATCTGCTCTTC
LOC_Os03g19630
Target Sequence 
ACGACGTGTTGATGAACTGTGGATGAGCGCGAGAGCTCGCGTCGTCGCACATTTGATCGACGATCTGCTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27626.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis