Browse Element(s) Details


OsAffx.27699.1.S1_at

Description tigr:9634.m01827
TID=OsAffx.27699.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1897010/11hypothetical protein
LOC_Os07g231691/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g18940OsAffx.2494.1.S1_at1/116+10763396..10766597hypothetical protein
LOC_Os06g18940OsAffx.12184.1.S1_x_at1/116+10763396..10766597hypothetical protein
LOC_Os06g18950OsAffx.22699.1.S1_x_at2/116+10766948..10773882retrotransposon protein, putative, unclassified
LOC_Os06g18950OsAffx.8279.1.S1_at1/116+10766948..10773882retrotransposon protein, putative, unclassified
LOC_Os06g18950OsAffx.31867.1.S1_x_at1/116+10766948..10773882retrotransposon protein, putative, unclassified
LOC_Os06g18960Os.56815.1.S1_at11/116+10779824..10783834expressed protein
LOC_Os06g18970OsAffx.27699.1.S1_at10/116+10790823..10797650hypothetical protein
LOC_Os06g18970Os.41695.15.S1_s_at7/116+10790823..10797650hypothetical protein
LOC_Os06g18970OsAffx.29202.1.S1_at1/116+10790823..10797650hypothetical protein
LOC_Os06g18980OsAffx.27700.1.S1_at11/116+10802013..10802563expressed protein
LOC_Os06g18990Os.52488.1.S1_at11/116+10805443..10808644expressed protein
LOC_Os06g19000OsAffx.27701.1.S1_at11/116+10809808..10810930hypothetical protein
LOC_Os06g19010Os.49938.1.S1_at10/116+10812017..10815112expressed protein
LOC_Os06g19020OsAffx.27702.1.S1_at10/116+10817801..10818535hypothetical protein
LOC_Os06g19030NANA6+10820537..10821565retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27699.1.S1_at--50--911Chr06:10792569..10792593 (25 bp)
AGGCGACTGCGGCTTTTCTGCCATC
LOC_Os06g18970
OsAffx.27699.1.S1_at--725--4431Chr06:10792550..10792574 (25 bp)
GCCATCCGCGCAACGAGCCAAGAAT
LOC_Os06g18970
OsAffx.27699.1.S1_at--623--2731Chr06:10792531..10792555 (25 bp)
AAGAATGCCGCGTCGATGGCTTTAT
LOC_Os06g18970
OsAffx.27699.1.S1_at--15--871Chr06:10792516..10792540 (25 bp)
ATGGCTTTATGGACGTCGTGCGCGA
LOC_Os06g18970
OsAffx.27699.1.S1_at--190--7951NONE
GGACCAGGCCTTGAAAGTTCGCCAA
NONE
OsAffx.27699.1.S1_at--870--2391Chr06:10791158..10791182 (25 bp)
AAACTTGCTGTAAGCTTAGGCTGCA
LOC_Os06g18970
OsAffx.27699.1.S1_at--75--4891Chr06:10791145..10791169 (25 bp)
GCTTAGGCTGCAGGTCAGTTGGATT
LOC_Os06g18970
OsAffx.27699.1.S1_at--107--10411Chr06:10791122..10791146 (25 bp)
TTAGATGACGTGTATCAACCGCGGA
LOC_Os06g18970
OsAffx.27699.1.S1_at--413--5091Chr06:10791071..10791095 (25 bp)
GCACCTATCTCCACGTGTCCAAGTA
LOC_Os06g18970
OsAffx.27699.1.S1_at--818--9392Chr07:13057755..13057774 (20 bp)
TCGTTGTCACGCATTCCACAGGGAA
LOC_Os07g23169
OsAffx.27699.1.S1_at--551--7991Chr06:10790922..10790946 (25 bp)
GGATGAGGATTACATCATACCATAT
LOC_Os06g18970
Target Sequence 
AGGCGACTGCGGCTTTTCTGCCATCCGCGCAACGAGCCAAGAATGCCGCGTCGATGGCTTTATGGACGTCGTGCGCGAGC
TCCCTGGCGTGGCCGGACCAGGCCTTGAAAGTTCGCCAAAGGTGCCGCAAACTTGCTGTAAGCTTAGGCTGCAGGTCAGT
TGGATTAGATGACGTGTATCAACCGCGGAGAGTACCACCACCACTACTTCAATCCGCACCTATCTCCACGTGTCCAAGTA
CCGCTCGACACTCCATCAGGATAGAAGAGCGTGAAGAAGTTGGTGGTTCGTCGTTGTCACGCATTCCACAGGGAAGGAGA
AAGGGGCAGGTGCAGGCTCCACCTAGCGACGACGACGAGGAGGAGGATGAGGATTACATCATACCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27699.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis