Browse Element(s) Details


OsAffx.27710.1.S1_at

Description tigr:9634.m01862
TID=OsAffx.27710.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g053202/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05270Os.49091.1.S1_at11/115+2573518..2576476sucrose-phosphatase, putative, expressed
LOC_Os05g05280Os.53552.1.S1_at11/115+2576565..2582182zinc finger family protein, putative, expressed
LOC_Os05g05280Os.2852.1.S1_at1/115+2576565..2582182zinc finger family protein, putative, expressed
LOC_Os05g05290Os.55368.1.S1_at11/115+2583464..2584282expressed protein
LOC_Os05g05300NANA5+2587556..2590142group II intron splicing factor CRS1, putative, expressed
LOC_Os05g05310Os.5008.1.S1_at11/115+2589701..2595265Fibronectin type III domain containing protein, expressed
LOC_Os05g05310Os.5008.1.S2_at11/115+2589701..2595265Fibronectin type III domain containing protein, expressed
LOC_Os05g05320Os.10857.1.S1_at11/115+2596186..2602317expressed protein
LOC_Os05g05320OsAffx.27710.1.S1_at2/115+2596186..2602317expressed protein
LOC_Os05g05330Os.10713.1.S1_at7/115+2603989..2608259expressed protein
LOC_Os05g05340OsAffx.14554.1.S1_at11/115+2609570..2610612hypothetical protein
LOC_Os05g05354OsAffx.14555.1.S1_at11/115+2616872..2627073expressed protein
LOC_Os05g05354Os.10892.1.S1_at11/115+2616872..2627073expressed protein
LOC_Os05g05354OsAffx.20913.1.S1_at3/115+2616872..2627073expressed protein
LOC_Os05g05354OsAffx.20913.1.S1_x_at3/115+2616872..2627073expressed protein
LOC_Os05g05354Os.16798.1.S1_at2/115+2616872..2627073expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27710.1.S1_at--970--451Chr06:10963468..10963492 (25 bp)
ATCTGCATGCGAGTAGATCACGGCA
NONE
OsAffx.27710.1.S1_at--861--3831Chr06:10963470..10963494 (25 bp)
CTGCATGCGAGTAGATCACGGCAAC
NONE
OsAffx.27710.1.S1_at--339--4991Chr06:10963472..10963496 (25 bp)
GCATGCGAGTAGATCACGGCAACAA
NONE
OsAffx.27710.1.S1_at--863--572Chr06:10963474..10963498 (25 bp)
ATGCGAGTAGATCACGGCAACAACT
NONE
OsAffx.27710.1.S1_at--403--9131Chr06:10963475..10963499 (25 bp)
TGCGAGTAGATCACGGCAACAACTA
NONE
OsAffx.27710.1.S1_at--421--4612Chr06:10963476..10963500 (25 bp)
GCGAGTAGATCACGGCAACAACTAC
NONE
OsAffx.27710.1.S1_at--1085--2191Chr06:10963493..10963517 (25 bp)
ACAACTACATGTGGGATGGGTATGA
NONE
OsAffx.27710.1.S1_at--153--8011Chr06:10963506..10963530 (25 bp)
GGATGGGTATGAGTTTATGCAGCCA
NONE
OsAffx.27710.1.S1_at--42--811Chr06:10963508..10963532 (25 bp)
ATGGGTATGAGTTTATGCAGCCAGA
NONE
OsAffx.27710.1.S1_at--960--6911Chr06:10963512..10963536 (25 bp)
GTATGAGTTTATGCAGCCAGAGGAG
NONE
OsAffx.27710.1.S1_at--853--10272Chr06:10963520..10963544 (25 bp)
TTATGCAGCCAGAGGAGGGCGGGCC
NONE
Target Sequence 
ATCTGCATGCGAGTAGATCACGGCAACAACTACATGTGGGATGGGTATGAGTTTATGCAGCCAGAGGAGGGCGGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27710.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis