Browse Element(s) Details


Os.10892.1.S1_at

Description gb:AK106767.1
DB_XREF= gi:32991976
TID=Os.10892.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10892 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-F03, full insert sequence.
FL= gb:AK106767.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0535411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05310Os.5008.1.S1_at11/115+2589701..2595265Fibronectin type III domain containing protein, expressed
LOC_Os05g05310Os.5008.1.S2_at11/115+2589701..2595265Fibronectin type III domain containing protein, expressed
LOC_Os05g05320Os.10857.1.S1_at11/115+2596186..2602317expressed protein
LOC_Os05g05320OsAffx.27710.1.S1_at2/115+2596186..2602317expressed protein
LOC_Os05g05330Os.10713.1.S1_at7/115+2603989..2608259expressed protein
LOC_Os05g05340OsAffx.14554.1.S1_at11/115+2609570..2610612hypothetical protein
LOC_Os05g05354OsAffx.14555.1.S1_at11/115+2616872..2627073expressed protein
LOC_Os05g05354Os.10892.1.S1_at11/115+2616872..2627073expressed protein
LOC_Os05g05354OsAffx.20913.1.S1_at3/115+2616872..2627073expressed protein
LOC_Os05g05354OsAffx.20913.1.S1_x_at3/115+2616872..2627073expressed protein
LOC_Os05g05354Os.16798.1.S1_at2/115+2616872..2627073expressed protein
LOC_Os05g05370OsAffx.26741.1.S1_at11/115+2630067..2634575hypothetical protein
LOC_Os05g05380OsAffx.4256.1.S1_at9/115+2643059..2644165hypothetical protein
LOC_Os05g05390OsAffx.14556.1.S1_at11/115+2650647..2657552expressed protein
LOC_Os05g05390OsAffx.26617.5.S1_x_at2/115+2650647..2657552expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10892.1.S1_at--82--1311Chr05:2618195..2618219 (25 bp)
AGATGTCCACTTGACCAAGCAGATT
LOC_Os05g05354
Os.10892.1.S1_at--790--412Chr12:16242291..16242354 (25 bp)
ATCATCAGATTCAGGTTCTCTCCAT
NONE
Os.10892.1.S1_at--208--591Chr05:2617379..2617403 (25 bp)
ATGCCCCTACTTCTACTGAAGGAAG
LOC_Os05g05354
Os.10892.1.S1_at--184--8991Chr05:2617363..2617387 (25 bp)
TGAAGGAAGGACACCCACCTGATCC
LOC_Os05g05354
Os.10892.1.S1_at--223--1151Chr05:2617297..2617321 (25 bp)
AGTCTCATCAAACACTACTGGCCAT
LOC_Os05g05354
Os.10892.1.S1_at--460--51Chr05:2617230..2617254 (25 bp)
ATTGTACGCTGCTGGTCATCTTTCC
LOC_Os05g05354
Os.10892.1.S1_at--386--7131Chr05:2617133..2617157 (25 bp)
GTCTTCCATTTTCTTGGAGTGCGTC
LOC_Os05g05354
Os.10892.1.S1_at--480--6111Chr05:2617117..2617141 (25 bp)
GAGTGCGTCTTTTCTTTTATCCTTT
LOC_Os05g05354
Os.10892.1.S1_at--553--6272Chr11:2562671..2562690 (20 bp)
GATGTCCATGAGCATGTTCTAGCTT
NONE
Os.10892.1.S1_at--1007--8791Chr05:2617030..2617054 (25 bp)
TGTTCTAGCTTTTCATTATGTCCAC
LOC_Os05g05354
Os.10892.1.S1_at--884--5531Chr05:2616947..2616971 (25 bp)
GAAACTCTACGTTTGGCCATTAACA
LOC_Os05g05354
Target Sequence 
AGATGTCCACTTGACCAAGCAGATTCAGATCCAGACAATTCTCAAATCTCTCTCACAGATCGAACATCGTCATCGTCATC
GTCATCGTCATCATCATCAGATTCAGGTTCTCTCCATGCCCCTACTTCTACTGAAGGAAGGACACCCACCTGATCCACCA
TAATCTGATCCAAGATTTTAATAACGTGTACATAGATAGTCTCATCAAACACTACTGGCCATCTCCCACTTATGGTATTA
ATCAACGTGTACATGGATAGACTCATTGTACGCTGCTGGTCATCTTTCCATCTCCCACTTATGGTATTAGTCAACGTGTA
AATGGATAGACTCATTGTACGCTGCTGGCCATCTTTGNTCTGTCTTCCATTTTCTTGGAGTGCGTCTTTTCTTTTATCCT
TTTTGGGATTCCTTAACCATATAGATATAACTATCTGTGAACATGGAGATGATGTCCATGAGCATGTTCTAGCTTTTCAT
TATGTCCACATGGAGCTATGCAAATATTTCTCTTTTTAGAGTTGAAACCTAGAATGTTTCTTTTTTAGAAACTCTACGTT
TGGCCATTAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10892.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis