Browse Element(s) Details


OsAffx.26741.1.S1_at

Description tigr:9633.m00471
TID=OsAffx.26741.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0537011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05330Os.10713.1.S1_at7/115+2603989..2608259expressed protein
LOC_Os05g05340OsAffx.14554.1.S1_at11/115+2609570..2610612hypothetical protein
LOC_Os05g05354OsAffx.14555.1.S1_at11/115+2616872..2627073expressed protein
LOC_Os05g05354Os.10892.1.S1_at11/115+2616872..2627073expressed protein
LOC_Os05g05354OsAffx.20913.1.S1_at3/115+2616872..2627073expressed protein
LOC_Os05g05354OsAffx.20913.1.S1_x_at3/115+2616872..2627073expressed protein
LOC_Os05g05354Os.16798.1.S1_at2/115+2616872..2627073expressed protein
LOC_Os05g05370OsAffx.26741.1.S1_at11/115+2630067..2634575hypothetical protein
LOC_Os05g05380OsAffx.4256.1.S1_at9/115+2643059..2644165hypothetical protein
LOC_Os05g05390OsAffx.14556.1.S1_at11/115+2650647..2657552expressed protein
LOC_Os05g05390OsAffx.26617.5.S1_x_at2/115+2650647..2657552expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26741.1.S1_at--179--4331Chr05:2630634..2630658 (25 bp)
CCATTGCCTTGACCATCTTTTTACT
LOC_Os05g05370
OsAffx.26741.1.S1_at--810--6451Chr05:2630500..2630524 (25 bp)
GATACTACTCGAGGGCAAACATTGT
LOC_Os05g05370
OsAffx.26741.1.S1_at--969--3531Chr05:2630381..2630405 (25 bp)
CATCCTGCGTTGGTTCCTAGTAAGA
LOC_Os05g05370
OsAffx.26741.1.S1_at--510--7891Chr05:2630334..2630358 (25 bp)
GGTTCTTATGGTTTCTTGGCCACCA
LOC_Os05g05370
OsAffx.26741.1.S1_at--1031--10331Chr05:2630309..2630333 (25 bp)
TTTAGGCCCAGGACAGTAGCATCGG
LOC_Os05g05370
OsAffx.26741.1.S1_at--1009--6951Chr05:2630294..2630318 (25 bp)
GTAGCATCGGGCAAGGTTTCTCATT
LOC_Os05g05370
OsAffx.26741.1.S1_at--1101--3591Chr05:2630273..2630297 (25 bp)
CATTGTGACCGGGAGTACGCTGACA
LOC_Os05g05370
OsAffx.26741.1.S1_at--700--2371Chr05:2630238..2630262 (25 bp)
AAACCTGGTCGGGTACACTATGACA
LOC_Os05g05370
OsAffx.26741.1.S1_at--62--1051Chr05:2630175..2630199 (25 bp)
AGGTGCTCCTTTGCTTGATGCTGAT
LOC_Os05g05370
OsAffx.26741.1.S1_at--358--8271Chr05:2630121..2630145 (25 bp)
GGCAGATGGCTGTTCTTGGTTTATA
LOC_Os05g05370
OsAffx.26741.1.S1_at--246--10351Chr05:2630102..2630126 (25 bp)
TTTATATCATTACCCGACATCTGCC
LOC_Os05g05370
Target Sequence 
CCATTGCCTTGACCATCTTTTTACTTCAGAAAATCCAATATCAGCTCAAGAGATAGGTGATTTATATGACATTAATATCA
TCTGTGATCACTATGAATGTAGTTTCCGCAAAGACAAGACACCGGACAAGATAAGATACTACTCGAGGGCAAACATTGTT
CAGATTGACTGTGACAAAGACTTAATCCTTCTAAATGTAAGCAAAAAGAATGTGCTTGCATATGGGAAGAATGGACGGGC
TTGCCGGCATTCTCATCCTGCGTTGGTTCCTAGTAAGAGACATCTAGAGCCAATGGAGAAGGTTCTTATGGTTTCTTGGC
CACCATTTAGGCCCAGGACAGTAGCATCGGGCAAGGTTTCTCATTGTGACCGGGAGTACGCTGACACAAGTAAAACAAAC
CTGGTCGGGTACACTATGACACTGGTTGAAGTGAATATACAGAGTGAACCTGGGGGCTCAGGTGCTCCTTTGCTTGATGC
TGATGCAAATTTCACTGGGGTACTGCATGGAGGGGCAGATGGCTGTTCTTGGTTTATATCATTACCCGACATCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26741.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis