Browse Element(s) Details


OsAffx.27824.1.S1_at

Description tigr:9634.m02566
TID=OsAffx.27824.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2594010/11hypothetical protein
LOC_Os04g162301/11hypothetical protein
LOC_Os09g033801/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g25910NANA6+15158225..15162373retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g25920NANA6+15174784..15175495retrotransposon, putative, centromere-specific
LOC_Os06g25930NANA6+15176968..15179111retrotransposon, putative, centromere-specific
LOC_Os06g25940OsAffx.27824.1.S1_at10/116+15180834..15181875hypothetical protein
LOC_Os06g25950OsAffx.15616.1.S1_at11/116+15188243..15196493expressed protein
LOC_Os06g25950Os.55104.1.S1_at10/116+15188243..15196493expressed protein
LOC_Os06g25960Os.46610.1.A1_x_at1/116+15197859..15199277hypothetical protein
LOC_Os06g25970NANA6+15206796..15207686retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27824.1.S1_at--724--1212Chr06:15180867..15180891 (25 bp)
AGAGCTCCCGTAGACGAGGTCGCGT
LOC_Os06g25940
OsAffx.27824.1.S1_at--51--2791Chr06:15180929..15180953 (25 bp)
AAGAGGATTTTCTCGGCGTGGAAAG
LOC_Os06g25940
OsAffx.27824.1.S1_at--343--151Chr06:15180935..15180959 (25 bp)
ATTTTCTCGGCGTGGAAAGAAGAGT
LOC_Os06g25940
OsAffx.27824.1.S1_at--394--1351Chr06:15180972..15180996 (25 bp)
AGAGTTGATGTCGAACGCGGCTTGA
LOC_Os06g25940
OsAffx.27824.1.S1_at--360--4111Chr06:15180983..15181007 (25 bp)
CGAACGCGGCTTGACGTCGATGGAA
LOC_Os06g25940
OsAffx.27824.1.S1_at--549--4912Chr11:17311951..17311975 (25 bp)
GCTTGACGTCGATGGAAGCTTTCAT
NONE
OsAffx.27824.1.S1_at--959--8171Chr06:15181004..15181028 (25 bp)
GGAAGCTTTCATCTTTTTCACGGCC
LOC_Os06g25940
OsAffx.27824.1.S1_at--294--10551Chr06:15181011..15181035 (25 bp)
TTCATCTTTTTCACGGCCGGCGACG
LOC_Os06g25940
OsAffx.27824.1.S1_at--497--10531NONE
TTCTTGGGTGATGTGTGGATTTTTC
NONE
OsAffx.27824.1.S1_at--694--797Chr11:28025886..28025906 (21 bp)
ATGTGTGGATTTTTCTGGAGGTAGA
NONE
OsAffx.27824.1.S1_at--372--6951Chr06:15181819..15181843 (25 bp)
GTAGATGAAGATACTCAGATTCCAT
LOC_Os06g25940
Target Sequence 
AGAGCTCCCGTAGACGAGGTCGCGTTCCCGTCGCTGCAGTGGACGAAACATGATGGAGTCAAAAGAGGATTTTCTCGGCG
TGGAAAGAAGAGTATGGAACGGAAAAGAGTTGATGTCGAACGCGGCTTGACGTCGATGGAAGCTTTCATCTTTTTCACGG
CCGGCGACGAGTTCTTGGGTGATGTGTGGATTTTTCTGGAGGTAGATGAAGATACTCAGATTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis