Browse Element(s) Details


OsAffx.15616.1.S1_at

Description tigr:9634.m02567
TID=OsAffx.15616.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2595011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g25920NANA6+15174784..15175495retrotransposon, putative, centromere-specific
LOC_Os06g25930NANA6+15176968..15179111retrotransposon, putative, centromere-specific
LOC_Os06g25940OsAffx.27824.1.S1_at10/116+15180834..15181875hypothetical protein
LOC_Os06g25950OsAffx.15616.1.S1_at11/116+15188243..15196493expressed protein
LOC_Os06g25950Os.55104.1.S1_at10/116+15188243..15196493expressed protein
LOC_Os06g25960Os.46610.1.A1_x_at1/116+15197859..15199277hypothetical protein
LOC_Os06g25970NANA6+15206796..15207686retrotransposon protein, putative, unclassified
LOC_Os06g25980OsAffx.4941.1.S1_at11/116+15213558..15214163hypothetical protein
LOC_Os06g25990OsAffx.20408.1.S1_at1/116+15217546..15222170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25990OsAffx.13774.1.S1_at1/116+15217546..15222170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25990OsAffx.9772.1.S1_at1/116+15217546..15222170retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15616.1.S1_at--249--9711Chr06:15191176..15191200 (25 bp)
TCAAAGGTCGCGGAGTCAGGGCACC
LOC_Os06g25950
OsAffx.15616.1.S1_at--981--9631Chr06:15191191..15191215 (25 bp)
TCAGGGCACCCGAGCACAGCTGCTA
LOC_Os06g25950
OsAffx.15616.1.S1_at--215--1811Chr06:15191198..15191222 (25 bp)
ACCCGAGCACAGCTGCTACAGGCGG
LOC_Os06g25950
OsAffx.15616.1.S1_at--903--4691Chr06:15191240..15191264 (25 bp)
GCGGCAGCAGCATTGCACGGCATCC
LOC_Os06g25950
OsAffx.15616.1.S1_at--913--1511Chr06:15191245..15191269 (25 bp)
AGCAGCATTGCACGGCATCCGGCCA
LOC_Os06g25950
OsAffx.15616.1.S1_at--526--6011Chr06:15191303..15191327 (25 bp)
GAGAGCAGCCAAGTACAGGCAGTAG
LOC_Os06g25950
OsAffx.15616.1.S1_at--816--1511Chr06:15191341..15191365 (25 bp)
AGCAGCAAGCAAAGACCAGCCGGCA
LOC_Os06g25950
OsAffx.15616.1.S1_at--370--2771Chr06:15191352..15191376 (25 bp)
AAGACCAGCCGGCAGGCAGCAAGCA
LOC_Os06g25950
OsAffx.15616.1.S1_at--981--2131Chr06:15191390..15191414 (25 bp)
ACAGAAAAATGGATCGCGCACGTTA
LOC_Os06g25950
OsAffx.15616.1.S1_at--1103--7951Chr06:15191400..15191424 (25 bp)
GGATCGCGCACGTTATATCGATTAA
LOC_Os06g25950
OsAffx.15616.1.S1_at--989--3091Chr06:15191431..15191455 (25 bp)
AATATGTTACGACAGAAAATCGGAC
LOC_Os06g25950
Target Sequence 
TCAAAGGTCGCGGAGTCAGGGCACCCGAGCACAGCTGCTACAGGCGGCAGCAGCAGTGCAGGAAGCGGCAGCAGCATTGC
ACGGCATCCGGCCATCCGGGCGGCGGAAGCTGTCTGTCAAGGGCAAGGAGAGCAGCCAAGTACAGGCAGTAGGAGGAGGC
AGGGCAGCAGCAAGCAAAGACCAGCCGGCAGGCAGCAAGCAGCAAATGGAAAGAACAGAAAAATGGATCGCGCACGTTAT
ATCGATTAAAAAACGAATATGTTACGACAGAAAATCGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15616.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis