Browse Element(s) Details


OsAffx.27825.1.S1_at

Description tigr:9634.m02582
TID=OsAffx.27825.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2608011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g26040OsAffx.15618.1.S1_at10/116+15239378..15240312hypothetical protein
LOC_Os06g26050OsAffx.4942.1.S1_at11/116+15241274..15241768hypothetical protein
LOC_Os06g26050OsAffx.4942.1.S1_x_at11/116+15241274..15241768hypothetical protein
LOC_Os06g26060OsAffx.13786.1.S1_x_at2/116+15247935..15249594retrotransposon protein, putative, unclassified
LOC_Os06g26070OsAffx.22699.1.S1_x_at2/116+15256081..15259783retrotransposon protein, putative, unclassified
LOC_Os06g26080OsAffx.27825.1.S1_at11/116+15264745..15266402hypothetical protein
LOC_Os06g26090NANA6+15268949..15269674retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g26100OsAffx.278.1.S1_at2/116+15270078..15274065retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g26110Os.27435.1.S1_x_at4/116+15274702..15276838hypothetical protein
LOC_Os06g26110Os.51856.1.S2_x_at1/116+15274702..15276838hypothetical protein
LOC_Os06g26110Os.51856.1.S2_at1/116+15274702..15276838hypothetical protein
LOC_Os06g26110Os.46334.1.S1_x_at1/116+15274702..15276838hypothetical protein
LOC_Os06g26120OsAffx.15620.1.S1_at11/116+15279892..15280654hypothetical protein
LOC_Os06g26130OsAffx.14839.1.S1_at1/116+15288366..15291158hypothetical protein
LOC_Os06g26130Os.31845.1.S1_x_at1/116+15288366..15291158hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27825.1.S1_at--847--2791Chr06:15265167..15265191 (25 bp)
AAGATGGTCGGAGGCCTGACCACTG
LOC_Os06g26080
OsAffx.27825.1.S1_at--217--8931Chr06:15265183..15265207 (25 bp)
TGACCACTGCCGAATTCGACCGCTT
LOC_Os06g26080
OsAffx.27825.1.S1_at--363--5431Chr06:15265235..15265259 (25 bp)
GAACCGCGTTCATGTCGGCGAGTTT
LOC_Os06g26080
OsAffx.27825.1.S1_at--332--7191Chr06:15265248..15265272 (25 bp)
GTCGGCGAGTTTACTAGTCGATCGA
LOC_Os06g26080
OsAffx.27825.1.S1_at--453--7211Chr06:15265264..15265288 (25 bp)
GTCGATCGATCATTTCCAAAGCCGC
LOC_Os06g26080
OsAffx.27825.1.S1_at--221--5771Chr06:15265296..15265320 (25 bp)
GACGTTGGGACATCGAAGAAGCGCA
LOC_Os06g26080
OsAffx.27825.1.S1_at--854--5871Chr06:15265483..15265506 (24 bp)
GAGCGAGCTCTGATGTTTCGCCCGG
LOC_Os06g26080
OsAffx.27825.1.S1_at--55--931Chr06:15266193..15266217 (25 bp)
AGGCTAGACGGGTACTGGCTTCACC
LOC_Os06g26080
OsAffx.27825.1.S1_at--509--3911Chr06:15266207..15266231 (25 bp)
CTGGCTTCACCTTCGGAAGACCGAA
LOC_Os06g26080
OsAffx.27825.1.S1_at--748--8171Chr06:15266221..15266245 (25 bp)
GGAAGACCGAAGAGGACCTCCGCCA
LOC_Os06g26080
OsAffx.27825.1.S1_at--380--7431Chr06:15266263..15266287 (25 bp)
GTGTCGTGCCGGACGCCTTGAAAAA
LOC_Os06g26080
Target Sequence 
AAGATGGTCGGAGGCCTGACCACTGCCGAATTCGACCGCTTGCTCCAACGTCAAGCCGATGGGAGGGCGAACCGCGTTCA
TGTCGGCGAGTTTACTAGTCGATCGATCATTTCCAAAGCCGCCGACGACGACGTTGGGACATCGAAGAAGCGCAAGCGAG
CCGTTGCGAAGGGTGGCCAGGTGCAAACTCGTCGCGCCACCAAGGACGCGCCCAACACCGACGCGGACGAGGAGGATGAC
GACGAAAGAGAGGCCGGGTCTAACGAAGAGGGCGGATCGCACGGCTACACCCCCAGTCCAGTCCAGGCGAAGGCTGGAGC
GAGCTCTGATGTTTCGCCCGGTCTCGCGGCGCACCTGAGCGCGAAACGGTCTGCCTTGGAGAGGCTAGACGGGTACTGGC
TTCACCTTCGGAAGACCGAAGAGGACCTCCGCCACAAGGAAGACGAACGCCGTGTCGTGCCGGACGCCTTGAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis