Browse Element(s) Details


OsAffx.4942.1.S1_x_at

Description tigr:9634.m02578
TID=OsAffx.4942.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2605011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g25990OsAffx.20408.1.S1_at1/116+15217546..15222170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25990OsAffx.13774.1.S1_at1/116+15217546..15222170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25990OsAffx.9772.1.S1_at1/116+15217546..15222170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g26000OsAffx.19815.1.S1_at1/116+15223784..15225120hypothetical protein
LOC_Os06g26010OsAffx.22699.1.S1_x_at1/116+15226360..15231638retrotransposon protein, putative, unclassified
LOC_Os06g26020OsAffx.15617.1.S1_x_at11/116+15233920..15234969hypothetical protein
LOC_Os06g26020OsAffx.15617.1.S1_at11/116+15233920..15234969hypothetical protein
LOC_Os06g26030Os.46334.1.S1_x_at1/116+15235366..15238130hypothetical protein
LOC_Os06g26030Os.49645.1.S1_at1/116+15235366..15238130hypothetical protein
LOC_Os06g26030Os.46334.1.S1_at1/116+15235366..15238130hypothetical protein
LOC_Os06g26040OsAffx.15618.1.S1_at10/116+15239378..15240312hypothetical protein
LOC_Os06g26050OsAffx.4942.1.S1_at11/116+15241274..15241768hypothetical protein
LOC_Os06g26050OsAffx.4942.1.S1_x_at11/116+15241274..15241768hypothetical protein
LOC_Os06g26060OsAffx.13786.1.S1_x_at2/116+15247935..15249594retrotransposon protein, putative, unclassified
LOC_Os06g26070OsAffx.22699.1.S1_x_at2/116+15256081..15259783retrotransposon protein, putative, unclassified
LOC_Os06g26080OsAffx.27825.1.S1_at11/116+15264745..15266402hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4942.1.S1_x_at--1042--671Chr06:15241699..15241723 (25 bp)
ATGACAGCGGCGTTCCAGCAATCTT
LOC_Os06g26050
OsAffx.4942.1.S1_x_at--226--6251Chr06:15241662..15241686 (25 bp)
GATGGTGGACAGTGTTCTCCTCGCA
LOC_Os06g26050
OsAffx.4942.1.S1_x_at--1036--1791Chr06:15241551..15241575 (25 bp)
ACCCACTGGTTCATGATGACGGAAC
LOC_Os06g26050
OsAffx.4942.1.S1_x_at--351--711Chr06:15241539..15241563 (25 bp)
ATGATGACGGAACACTTCCAGCGGG
LOC_Os06g26050
OsAffx.4942.1.S1_x_at--716--8931Chr06:15241535..15241559 (25 bp)
TGACGGAACACTTCCAGCGGGAGTT
LOC_Os06g26050
OsAffx.4942.1.S1_x_at--204--8171Chr06:15241531..15241555 (25 bp)
GGAACACTTCCAGCGGGAGTTGACT
LOC_Os06g26050
OsAffx.4942.1.S1_x_at--1158--3311Chr06:15241527..15241551 (25 bp)
CACTTCCAGCGGGAGTTGACTTTGG
LOC_Os06g26050
OsAffx.4942.1.S1_x_at--179--10751Chr06:15241512..15241536 (25 bp)
TTGACTTTGGGAAACCGATGGCCGG
LOC_Os06g26050
OsAffx.4942.1.S1_x_at--726--10031Chr06:15241485..15241509 (25 bp)
TAGAGATCAACATTGCGGAGTGGTG
LOC_Os06g26050
OsAffx.4942.1.S1_x_at--1012--6211Chr06:15241431..15241455 (25 bp)
GAGGCGACGCGTACTGCCGGCTGGA
LOC_Os06g26050
OsAffx.4942.1.S1_x_at--782--6331Chr06:15241307..15241331 (25 bp)
GATGCTATTCATAGGCAAAGGTGGA
LOC_Os06g26050
Target Sequence 
ATGACAGCGGCGTTCCAGCAATCTTTGGCGAAGACGAGATGGTGGACAGTGTTCTCCTCGCAGCTGCGAATCCATTGGAG
GCGGCGGCGACCGAAGGCGACGACGGGAGGTGCAGCAGGGCCTCGCCGGAGATCAAAACGCAATGGCAACCCACTGGTTC
ATGATGACGGAACACTTCCAGCGGGAGTTGACTTTGGGAAACCGATGGCCGGGGTAGAGATCAACATTGCGGAGTGGTGG
GAAGTGGCGGAACTGACCGGAGATGGCGGAGGCGACGCGTACTGCCGGCTGGAGCGGCGGCCGGAGTTGGAGAGAGAAGG
CAAACGTGGGGAGGCGGCTAGGGTCAGGGAAAACTTCGGGAAACAGAGGGAAACAGAAGAGGAGGCCGAGGGGATGCTAT
TCATAGGCAAAGGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4942.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis