Browse Element(s) Details


OsAffx.27834.1.S1_at

Description tigr:9634.m02616
TID=OsAffx.27834.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2751011/11hypothetical protein
LOC_Os12g072901/11Alpha4-fucosyltransferase, putative, expressed
LOC_Os01g184601/11hypothetical protein
LOC_Os02g569601/1160S ribosomal protein L23, putative, expressed
LOC_Os07g478601/11tRNA synthetases class I family protein, expressed
LOC_Os03g563001/11NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os02g343701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g27460Os.46012.2.S1_x_at10/116+15545140..15549775retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g27460Os.46012.3.S1_x_at7/116+15545140..15549775retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g27460Os.27088.1.A1_x_at5/116+15545140..15549775retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g27460Os.54691.1.S1_x_at1/116+15545140..15549775retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g27470NANA6+15552170..15552664hypothetical protein
LOC_Os06g27480OsAffx.22699.1.S1_x_at1/116+15555366..15562338retrotransposon protein, putative, unclassified, expressed
LOC_Os06g27480Os.52731.1.S1_at1/116+15555366..15562338retrotransposon protein, putative, unclassified, expressed
LOC_Os06g27490NANA6+15562657..15565853hypothetical protein
LOC_Os06g27500NANA6+15567534..15569737hypothetical protein
LOC_Os06g27510OsAffx.27834.1.S1_at11/116+15572832..15573050hypothetical protein
LOC_Os06g27520OsAffx.28563.1.S1_x_at1/116+15583221..15584729hypothetical protein
LOC_Os06g27520OsAffx.16416.1.S1_x_at1/116+15583221..15584729hypothetical protein
LOC_Os06g27530OsAffx.24317.2.S1_x_at10/116+15586279..15587703hypothetical protein
LOC_Os06g27540OsAffx.30032.4.S1_at1/116+15588926..15593922retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27550NANA6+15595294..15596839hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006412biological_processprotein biosynthesis
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0015979biological_processphotosynthesis
GO:0000311cellular_componentplastid large ribosomal subunit
GO:0005739cellular_componentmitochondrion
GO:0005840cellular_componentribosome
GO:0009507cellular_componentchloroplast
GO:0003735molecular_functionstructural constituent of ribosome
GO:0003959molecular_functionNADPH dehydrogenase activity
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
GO:0008417molecular_functionfucosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0017083molecular_function4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27834.1.S1_at--938--10231Chr06:15572841..15572865 (25 bp)
TTTGAACAAGATCCAAATCCTGGCG
LOC_Os06g27510
OsAffx.27834.1.S1_at--547--5511Chr06:15572844..15572868 (25 bp)
GAACAAGATCCAAATCCTGGCGATT
LOC_Os06g27510
OsAffx.27834.1.S1_at--1052--3031Chr06:15572856..15572880 (25 bp)
AATCCTGGCGATTGGAGGCACCATT
LOC_Os06g27510
OsAffx.27834.1.S1_at--37--571Chr06:15572857..15572881 (25 bp)
ATCCTGGCGATTGGAGGCACCATTC
LOC_Os06g27510
OsAffx.27834.1.S1_at--381--4271Chr06:15572859..15572883 (25 bp)
CCTGGCGATTGGAGGCACCATTCAA
LOC_Os06g27510
OsAffx.27834.1.S1_at--386--8371Chr06:15572862..15572886 (25 bp)
GGCGATTGGAGGCACCATTCAAGCC
LOC_Os06g27510
OsAffx.27834.1.S1_at--789--6591Chr06:15572865..15572889 (25 bp)
GATTGGAGGCACCATTCAAGCCTTG
LOC_Os06g27510
OsAffx.27834.1.S1_at--447--10871Chr06:15572867..15572891 (25 bp)
TTGGAGGCACCATTCAAGCCTTGTT
LOC_Os06g27510
OsAffx.27834.1.S1_at--594--8011Chr06:15572869..15572893 (25 bp)
GGAGGCACCATTCAAGCCTTGTTCG
LOC_Os06g27510
OsAffx.27834.1.S1_at--486--931Chr06:15572871..15572895 (25 bp)
AGGCACCATTCAAGCCTTGTTCGGT
LOC_Os06g27510
OsAffx.27834.1.S1_at--439--97332Chr12:3583425..3583449 (25 bp)
TCAATCCCCTCCAAACCGAACAAGG
LOC_Os12g07290
Target Sequence 
TTTGAACAAGATCCAAATCCTGGCGATTGGAGGCACCATTCAAGCCTTGTTCGGTTAATGCCCATGAGGGAGGAATTGGA
GAGGATTTATTCCCCACCTATTGTGGTGTGGAATTATTCCCCCTCAATCCCCTCCAAACCGAACAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27834.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis