Browse Element(s) Details


OsAffx.27848.1.S1_at

Description tigr:9634.m02716
TID=OsAffx.27848.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2842011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28380NANA6+16138294..16143763retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g28390NANA6+16149734..16156327retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28400NANA6+16159253..16159966retrotransposon, putative, centromere-specific
LOC_Os06g28410NANA6+16161417..16163522retrotransposon, putative, centromere-specific
LOC_Os06g28420OsAffx.27848.1.S1_at11/116+16167795..16168594hypothetical protein
LOC_Os06g28430OsAffx.15645.1.S1_at11/116+16176381..16177461hypothetical protein
LOC_Os06g28440NANA6+16177851..16178333retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g28450OsAffx.1196.1.S1_x_at1/116+16178853..16182852retrotransposon protein, putative, unclassified
LOC_Os06g28450OsAffx.1196.1.S1_at1/116+16178853..16182852retrotransposon protein, putative, unclassified
LOC_Os06g28460OsAffx.10528.1.S1_x_at1/116+16186334..16193212retrotransposon protein, putative, unclassified
LOC_Os06g28460Os.10959.1.S2_at1/116+16186334..16193212retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27848.1.S1_at--431--9151Chr06:16168419..16168443 (25 bp)
TGCCCGACACAACCGGTAGCGGCGT
LOC_Os06g28420
OsAffx.27848.1.S1_at--404--4211Chr06:16168416..16168440 (25 bp)
CCGACACAACCGGTAGCGGCGTGGA
LOC_Os06g28420
OsAffx.27848.1.S1_at--524--4191Chr06:16168369..16168393 (25 bp)
CCCGGTCGGACGACCACAAGTGGTG
LOC_Os06g28420
OsAffx.27848.1.S1_at--944--7571Chr06:16168164..16168188 (25 bp)
GGGCGGACGAGCTCAGCCTTGATCT
LOC_Os06g28420
OsAffx.27848.1.S1_at--449--4691Chr06:16168162..16168186 (25 bp)
GCGGACGAGCTCAGCCTTGATCTAA
LOC_Os06g28420
OsAffx.27848.1.S1_at--857--5771Chr06:16168159..16168183 (25 bp)
GACGAGCTCAGCCTTGATCTAAGGA
LOC_Os06g28420
OsAffx.27848.1.S1_at--701--1571Chr06:16168155..16168179 (25 bp)
AGCTCAGCCTTGATCTAAGGAAGAT
LOC_Os06g28420
OsAffx.27848.1.S1_at--1119--2778Chr10:11101409..11101433 (25 bp)
AAGAGGGCCAGTGGCCGAGGATCTC
NONE
OsAffx.27848.1.S1_at--494--9451Chr06:16167946..16167970 (25 bp)
TCGGCGTGGACCAAAGCGGCATTGT
LOC_Os06g28420
OsAffx.27848.1.S1_at--495--4671Chr06:16167943..16167967 (25 bp)
GCGTGGACCAAAGCGGCATTGTGAC
LOC_Os06g28420
OsAffx.27848.1.S1_at--779--4371Chr06:16167936..16167960 (25 bp)
CCAAAGCGGCATTGTGACGCGGCTG
LOC_Os06g28420
Target Sequence 
TGCCCGACACAACCGGTAGCGGCGTGGAGCGCGGAGCGCGGCGACGGCGACCCGGTCGGACGACCACAAGTGGTGGCGGC
GCGTCACGAGCAGGCACAGGAGGTGGCCGACGAAGGGGAGGAAGGGGGAGAGGGAAGGGAGTGCTCACCGAGCGGCACGA
CGGCAAACGAGCGGCCGACGGCAAGGAACGGCGGCGGCGGGGCTCCTCGGGAAGACGGCGCGACGGAGCTCCGGTGACGG
GCGTCGCTCGGGAAGGGGCGGACGAGCTCAGCCTTGATCTAAGGAAGATCATTGAGGGGTTAGGGAGGAGGATCTCACCG
GTGACCGAGGGGGGTGGAGCTCGAGCGGATTTCCGGCGAAGAGGGCCAGTGGCCGAGGATCTCCCCGTCCTTGCGAAGCC
AAGGGAGGCGACGGCGTGGGTCGGCGTGGACCAAAGCGGCATTGTGACGCGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27848.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis