Browse Element(s) Details


OsAffx.27883.1.S1_at

Description tigr:9634.m02933
TID=OsAffx.27883.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3049011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30460Os.22279.1.S1_at11/116+17596802..176086742-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os06g30460Os.22279.3.S1_x_at9/116+17596802..176086742-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os06g30470OsAffx.4972.1.S1_at8/116+17608800..17611799expressed protein
LOC_Os06g30480Os.27351.1.S1_x_at8/116+17616360..17617969expressed protein
LOC_Os06g30480OsAffx.24778.1.S1_s_at1/116+17616360..17617969expressed protein
LOC_Os06g30490OsAffx.27883.1.S1_at11/116+17625945..17626533hypothetical protein
LOC_Os06g30500OsAffx.27884.1.S1_at11/116+17629607..17631315Cytochrome P450 family protein, expressed
LOC_Os06g30510OsAffx.448.1.S1_x_at1/116+17638394..17645636retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27883.1.S1_at--805--8271Chr06:17625975..17625999 (25 bp)
GGCATGTCGATTCAGCTCCGGGCAT
LOC_Os06g30490
OsAffx.27883.1.S1_at--851--7211Chr06:17625980..17626004 (25 bp)
GTCGATTCAGCTCCGGGCATGTCAA
LOC_Os06g30490
OsAffx.27883.1.S1_at--786--9271Chr06:17625991..17626015 (25 bp)
TCCGGGCATGTCAACGATCGATCGA
LOC_Os06g30490
OsAffx.27883.1.S1_at--725--4051Chr06:17626005..17626029 (25 bp)
CGATCGATCGAGGATGCACTAGTGA
LOC_Os06g30490
OsAffx.27883.1.S1_at--850--5371Chr06:17626045..17626409 (25 bp)
GAAGAACAGATCTAGCCATCACCAC
LOC_Os06g30490
OsAffx.27883.1.S1_at--472--1711Chr06:17626405..17626429 (25 bp)
ACCACCTACCTATTGGCGGTCGGAT
LOC_Os06g30490
OsAffx.27883.1.S1_at--47--9971Chr06:17626411..17626435 (25 bp)
TACCTATTGGCGGTCGGATTCGACA
LOC_Os06g30490
OsAffx.27883.1.S1_at--896--7791Chr06:17626422..17626446 (25 bp)
GGTCGGATTCGACAAAGTCAAGGAT
LOC_Os06g30490
OsAffx.27883.1.S1_at--100--6471Chr06:17626444..17626468 (25 bp)
GATAGTGGTGTAGAGTCTCCCCGCT
LOC_Os06g30490
OsAffx.27883.1.S1_at--101--4911Chr06:17626466..17626490 (25 bp)
GCTTCTCACCTGAGTATCCAACACT
LOC_Os06g30490
OsAffx.27883.1.S1_at--74--6091Chr06:17626477..17626501 (25 bp)
GAGTATCCAACACTTGCTGCTGTGA
LOC_Os06g30490
Target Sequence 
GGCATGTCGATTCAGCTCCGGGCATGTCAACGATCGATCGAGGATGCACTAGTGAGTGAAGATCAGAGAAGAAGAACAGA
TCTAGCCATCACCACCTACCTATTGGCGGTCGGATTCGACAAAGTCAAGGATAGTGGTGTAGAGTCTCCCCGCTTCTCAC
CTGAGTATCCAACACTTGCTGCTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27883.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis