Browse Element(s) Details


OsAffx.27926.1.S1_at

Description tigr:9634.m03224
TID=OsAffx.27926.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3426011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34200OsAffx.15726.1.S1_at11/116+19921057..19922261hypothetical protein
LOC_Os06g34210NANA6+19925941..19926312hypothetical protein
LOC_Os06g34220NANA6+19926820..19927721retrotransposon protein, putative, unclassified
LOC_Os06g34230OsAffx.19678.3.A1_at2/116+19930579..19931079hypothetical protein
LOC_Os06g34240OsAffx.435.1.S1_at1/116+19934521..19937636retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g34250NANA6+19938090..19939931hypothetical protein
LOC_Os06g34260OsAffx.27926.1.S1_at11/116+19941281..19942503hypothetical protein
LOC_Os06g34270OsAffx.4998.1.S1_at11/116+19947202..19949049hypothetical protein
LOC_Os06g34280NANA6+19949548..19949978hypothetical protein
LOC_Os06g34290OsAffx.15729.1.S1_at11/116+19951463..19953431hypothetical protein
LOC_Os06g34290OsAffx.15729.1.S1_x_at11/116+19951463..19953431hypothetical protein
LOC_Os06g34300NANA6+19954812..19955737hypothetical protein
LOC_Os06g34310Os.53479.1.S1_x_at2/116+19955919..19960135Zinc knuckle family protein
LOC_Os06g34310OsAffx.15648.1.S1_at1/116+19955919..19960135Zinc knuckle family protein
LOC_Os06g34310Os.25754.2.S1_x_at1/116+19955919..19960135Zinc knuckle family protein
LOC_Os06g34310OsAffx.15536.1.S1_x_at1/116+19955919..19960135Zinc knuckle family protein
LOC_Os06g34320OsAffx.20387.1.S1_x_at2/116+19960878..19965529retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27926.1.S1_at--20--7571Chr06:19942212..19942236 (25 bp)
GGGCGAAGACGAACCTAACAGTACA
LOC_Os06g34260
OsAffx.27926.1.S1_at--71--7031Chr06:19942232..19942256 (25 bp)
GTACAGTACCTAAAGCTCTTATACC
LOC_Os06g34260
OsAffx.27926.1.S1_at--134--4811Chr06:19942246..19942270 (25 bp)
GCTCTTATACCACTTGATGGCAACT
LOC_Os06g34260
OsAffx.27926.1.S1_at--1040--6231Chr06:19942261..19942285 (25 bp)
GATGGCAACTGGATGCCCGATCTTT
LOC_Os06g34260
OsAffx.27926.1.S1_at--540--6351Chr06:19942272..19942296 (25 bp)
GATGCCCGATCTTTTGTCAGGTGAA
LOC_Os06g34260
OsAffx.27926.1.S1_at--535--6451Chr06:19942344..19942368 (25 bp)
GATCAAGACGATGCAAACCCTACAA
LOC_Os06g34260
OsAffx.27926.1.S1_at--319--1811Chr06:19942360..19942384 (25 bp)
ACCCTACAATCGCAACACAATGTCT
LOC_Os06g34260
OsAffx.27926.1.S1_at--604--67920Chr12:11383224..11383244 (21 bp)
GTTATCAACCATGCCGAAACCTGAT
NONE
OsAffx.27926.1.S1_at--698--5553Chr09:11169052..11169076 (24 bp)
GAAACCTGATTGACCTCACGAGAAC
NONE
OsAffx.27926.1.S1_at--786--5831Chr06:19942417..19942441 (25 bp)
GACCTCACGAGAACGGTAATCCTTA
LOC_Os06g34260
OsAffx.27926.1.S1_at--656--7831Chr06:19942431..19942455 (25 bp)
GGTAATCCTTACATGTGAATCGAAG
LOC_Os06g34260
Target Sequence 
GGGCGAAGACGAACCTAACAGTACAGTACCTAAAGCTCTTATACCACTTGATGGCAACTGGATGCCCGATCTTTTGTCAG
GTGAAGATAACTATCGATTTGGTGGAAACTTGACACACAAGATCTGGCTTCTGATCAAGACGATGCAAACCCTACAATCG
CAACACAATGTCTCCTTTGGTTATCAACCATGCCGAAACCTGATTGACCTCACGAGAACGGTAATCCTTACATGTGAATC
GAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27926.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis