Browse Element(s) Details


OsAffx.2794.1.S1_at

Description tigr:9630.m02821
TID=OsAffx.2794.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2954011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29510Os.49406.1.S1_at11/112+17521680..17533575Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os02g29510OsAffx.20275.1.S1_at1/112+17521680..17533575Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os02g29520OsAffx.2793.1.S1_at11/112+17535907..17536320hypothetical protein
LOC_Os02g29530Os.7819.1.S1_at11/112+17553350..17556934Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os02g29540OsAffx.2794.1.S1_at11/112+17558469..17558870hypothetical protein
LOC_Os02g29550Os.14087.1.S1_at11/112+17569259..17576355AP2 domain containing protein, expressed
LOC_Os02g29550Os.14602.1.S1_at9/112+17569259..17576355AP2 domain containing protein, expressed
LOC_Os02g29550OsAffx.32283.1.S1_at1/112+17569259..17576355AP2 domain containing protein, expressed
LOC_Os02g29570Os.27435.1.S1_x_at2/112+17582204..17588100retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2794.1.S1_at--847--2031Chr02:17558791..17558815 (25 bp)
ACTTATCCGTGCTCGTTGCCCGTGT
LOC_Os02g29540
OsAffx.2794.1.S1_at--935--10411Chr02:17558789..17558813 (25 bp)
TTATCCGTGCTCGTTGCCCGTGTCA
LOC_Os02g29540
OsAffx.2794.1.S1_at--979--8731Chr02:17558769..17558793 (25 bp)
TGTCACCGAGCTTTGCCTTGACCAC
LOC_Os02g29540
OsAffx.2794.1.S1_at--573--10271Chr02:17558758..17558782 (25 bp)
TTTGCCTTGACCACGTCCGCGTCAA
LOC_Os02g29540
OsAffx.2794.1.S1_at--441--4411Chr02:17558717..17558741 (25 bp)
GCCATCGACCTCAAGGTTACGACGG
LOC_Os02g29540
OsAffx.2794.1.S1_at--869--4071Chr02:17558712..17558736 (25 bp)
CGACCTCAAGGTTACGACGGAGGAG
LOC_Os02g29540
OsAffx.2794.1.S1_at--1068--7191Chr02:17558596..17558620 (25 bp)
GTCGTCCGCAGTCCCAATGCGCATC
LOC_Os02g29540
OsAffx.2794.1.S1_at--660--571Chr02:17558565..17558589 (25 bp)
ATCCACTTCCTCTCCTGATGTGTTG
LOC_Os02g29540
OsAffx.2794.1.S1_at--66--2071Chr02:17558561..17558585 (25 bp)
ACTTCCTCTCCTGATGTGTTGTGCT
LOC_Os02g29540
OsAffx.2794.1.S1_at--760--4291Chr02:17558557..17558581 (25 bp)
CCTCTCCTGATGTGTTGTGCTCCAT
LOC_Os02g29540
OsAffx.2794.1.S1_at--544--6631Chr02:17558544..17558568 (25 bp)
GTTGTGCTCCATGAGGCCAGCAGCA
LOC_Os02g29540
Target Sequence 
ACTTATCCGTGCTCGTTGCCCGTGTCACCGAGCTTTGCCTTGACCACGTCCGCGTCAACCCATCCCCATTCCCAGCCATC
GACCTCAAGGTTACGACGGAGGAGGGGAGCAGCAGTGGCGACCGGCGAGGAAGGCGGTCCTCAGCGGTGGAGGAAAGGAG
GGAGGAGAGGGAGATGGCGATGTGTCGTCACCATCGTCGTCCGCAGTCCCAATGCGCATCCCGTCCATCCACTTCCTCTC
CTGATGTGTTGTGCTCCATGAGGCCAGCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2794.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis