Browse Element(s) Details


OsAffx.27959.1.S1_x_at

Description tigr:9634.m03419
TID=OsAffx.27959.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F2K11.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3608011/11Kinesin motor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36060NANA6+21072819..21078104hypothetical protein
LOC_Os06g36070OsAffx.15770.1.S1_at11/116+21088971..21090313expressed protein
LOC_Os06g36080OsAffx.27959.1.S1_x_at11/116+21102639..21111734Kinesin motor domain containing protein, expressed
LOC_Os06g36080Os.19335.1.S1_at11/116+21102639..21111734Kinesin motor domain containing protein, expressed
LOC_Os06g36080OsAffx.27303.1.S1_at1/116+21102639..21111734Kinesin motor domain containing protein, expressed
LOC_Os06g36090Os.15456.1.S1_at11/116+21112237..21119651ABC transporter family protein, putative, expressed
LOC_Os06g36090Os.15456.2.S1_x_at4/116+21112237..21119651ABC transporter family protein, putative, expressed
LOC_Os06g36099NANA6+21128367..21128976NA
LOC_Os06g36110OsAffx.20733.1.A1_x_at1/116+21136513..21141892retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27959.1.S1_x_at--517--5591Chr06:21109421..21109445 (25 bp)
GAAATCAGCCGACTACAACTACAGA
LOC_Os06g36080
OsAffx.27959.1.S1_x_at--3--4611Chr06:21109463..21109487 (25 bp)
GCGACAGCTAAACGTGCCGATTCAT
LOC_Os06g36080
OsAffx.27959.1.S1_x_at--1011--6651Chr06:21109604..21109628 (25 bp)
GTTGACAACTTCTCTGACATCAGTG
LOC_Os06g36080
OsAffx.27959.1.S1_x_at--901--2671Chr06:21109641..21109665 (25 bp)
AAGCTGGTTCCATGCAATCTGTCGA
LOC_Os06g36080
OsAffx.27959.1.S1_x_at--641--1251Chr06:21109686..21109710 (25 bp)
AGATTATGGGTCTCTCTAAGCTCTC
LOC_Os06g36080
OsAffx.27959.1.S1_x_at--305--371Chr06:21109728..21109752 (25 bp)
ATAATTCTGTTGACCCTGAGCTTCC
LOC_Os06g36080
OsAffx.27959.1.S1_x_at--5--4931Chr06:21109747..21109771 (25 bp)
GCTTCCTTGCTTTGGCTATGATGAT
LOC_Os06g36080
OsAffx.27959.1.S1_x_at--1044--2151Chr06:21109800..21109824 (25 bp)
ACAGCGGTCTTTCCATGGGTGCAGA
LOC_Os06g36080
OsAffx.27959.1.S1_x_at--539--1531Chr06:21109841..21109865 (25 bp)
AGCAGTGTGGTTGAGCTTACCTCCT
LOC_Os06g36080
OsAffx.27959.1.S1_x_at--402--10451Chr06:21109857..21109881 (25 bp)
TTACCTCCTTGCCAGATCAGGATAG
LOC_Os06g36080
OsAffx.27959.1.S1_x_at--481--7951Chr06:21109876..21109900 (25 bp)
GGATAGAGTCTCTGGCACTCAGAAA
LOC_Os06g36080
Target Sequence 
GAAATCAGCCGACTACAACTACAGAGTCATAATACTCCAAGGGCGACAGCTAAACGTGCCGATTCATTGTTAAAACATTC
GTCATCCTCCCCAGGCATATCATCACTAGGAAGCAAAATCCAGCACCGAAGAACAGCATCTGGTGGAAGGATAAAGATCG
TTGGCAGTAGAGCAGGGTCGGATGTTGACAACTTCTCTGACATCAGTGACAGACATTCTGAAGCTGGTTCCATGCAATCT
GTCGATGATATCCAGCAGTCAAGGGAGATTATGGGTCTCTCTAAGCTCTCCATGAGTGAGATGGGACATAATTCTGTTGA
CCCTGAGCTTCCTTGCTTTGGCTATGATGATTCAGAGGGGAGGCTAAGCGACATATCGGACAGCGGTCTTTCCATGGGTG
CAGAAACTGATTGTTCTATGAGCAGTGTGGTTGAGCTTACCTCCTTGCCAGATCAGGATAGAGTCTCTGGCACTCAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27959.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis