Browse Element(s) Details


OsAffx.28016.1.S1_at

Description tigr:9634.m03824
TID=OsAffx.28016.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BT003086 At4g32440
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g399002/11Agenet domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39880Os.6960.1.S1_at11/116+23703718..23706251cytochrome P450, putative, expressed
LOC_Os06g39890OsAffx.15850.1.S1_at11/116+23706545..23708083hypothetical protein
LOC_Os06g39890OsAffx.29628.1.S1_at1/116+23706545..23708083hypothetical protein
LOC_Os06g39900Os.15722.1.S1_s_at11/116+23720780..23725850Agenet domain containing protein, expressed
LOC_Os06g39900Os.52129.1.S1_at11/116+23720780..23725850Agenet domain containing protein, expressed
LOC_Os06g39900OsAffx.28016.1.S1_at2/116+23720780..23725850Agenet domain containing protein, expressed
LOC_Os06g39906Os.26397.1.S1_at11/116+23731558..23733539Homeobox domain containing protein, expressed
LOC_Os06g39912Os.37009.1.S1_at11/116+23735838..23736879expressed protein
LOC_Os06g39912OsAffx.5065.1.S1_x_at8/116+23735838..23736879expressed protein
LOC_Os06g39920NANA6+23742165..23746361retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g39930NANA6+23747418..23753573retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28016.1.S1_at--521--4311Chr06:23721407..23721624 (25 bp)
CCTTCAAGAACTCACATGCTTCACA
LOC_Os06g39900
OsAffx.28016.1.S1_at--285--1911Chr06:23721030..23721381 (25 bp)
ACGTGTGTCATGGTTGCACGCATTT
LOC_Os06g39900
OsAffx.28016.1.S1_at--277--9971Chr06:23719717..23719741 (25 bp)
TACCGTGTGTTGTTTGATGTGCTCT
NONE
OsAffx.28016.1.S1_at--1066--771Chr06:23719701..23719725 (25 bp)
ATGTGCTCTGCATTGGGTATCAACA
NONE
OsAffx.28016.1.S1_at--279--2391Chr06:23719627..23719651 (25 bp)
AAACGGATCATCAGGCGACGCAGAC
NONE
OsAffx.28016.1.S1_at--565--891Chr06:23719615..23719639 (25 bp)
AGGCGACGCAGACACTTTCAGGTTT
NONE
OsAffx.28016.1.S1_at--202--10311Chr06:23719600..23719624 (25 bp)
TTTCAGGTTTCCACTCAAGGCAAGC
NONE
OsAffx.28016.1.S1_at--470--9851Chr06:23719566..23719590 (25 bp)
TACAATGTTCTCCATTTCCGCATAA
NONE
OsAffx.28016.1.S1_at--1131--551Chr06:23719497..23719521 (25 bp)
ATCCTGTCCTGGCAAGATTCTGCAA
NONE
OsAffx.28016.1.S1_at--673--1691Chr06:23719448..23719472 (25 bp)
AGCCACTGCTTTTATCAGCTTATGG
NONE
OsAffx.28016.1.S1_at--654--5771Chr06:23719099..23719123 (25 bp)
GACGATGATCCTGAGCACTGGAACA
NONE
Target Sequence 
CCTTCAAGAACTCACATGCTTCACAAGGACTCAGGAGGTTCTCACGCAAAACGTGTGTCATGGTTGCACGCATTTGACAA
GTTCCCTTTTCAGAAGAAGCATTATATGGTGCACCTGGTGTTTTCAGATGAGCAAAGAAAATACCGTGTGTTGTTTGATG
TGCTCTGCATTGGGTATCAACATCATGAAACGGAATCATCCACAGAAGCAGAGCAGAGAATCAGAGAGTACAAACGGATC
ATCAGGCGACGCAGACACTTTCAGGTTTCCACTCAAGGCAAGCAACATGTACTACAATGTTCTCCATTTCCGCATAAAAA
AGTCCAAAAACGATTTCAAGGACAGCAGAGGCCGGCCATCCATCCTGTCCTGGCAAGATTCTGCAAGAAAGAATCAATGA
AGCCAAGCCAAGCCACTGCTTTTATCAGCTTATGGGGCTCGTGGATTCTCCACGCCAAGTGCATGGGCATGAGAGATGGA
GCCATGGCTGACGACGACGATGATCCTGAGCACTGGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis