Browse Element(s) Details


OsAffx.28025.3.S1_at

Description tigr:9639.m01663
TID=OsAffx.28025.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1807011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18044Os.11388.1.S1_at11/1111+10111373..10121816POT family protein, expressed
LOC_Os11g18044OsAffx.7137.1.S1_at7/1111+10111373..10121816POT family protein, expressed
LOC_Os11g18044OsAffx.18909.1.S1_x_at1/1111+10111373..10121816POT family protein, expressed
LOC_Os11g18070OsAffx.28025.3.S1_at11/1111+10134698..10137988hypothetical protein
LOC_Os11g18070Os.20978.1.S1_at1/1111+10134698..10137988hypothetical protein
LOC_Os11g18080OsAffx.31892.1.S1_x_at5/1111+10143068..10148047retrotransposon, putative, centromere-specific
LOC_Os11g18080OsAffx.31892.5.S1_x_at3/1111+10143068..10148047retrotransposon, putative, centromere-specific
LOC_Os11g18080OsAffx.31892.5.S1_at2/1111+10143068..10148047retrotransposon, putative, centromere-specific
LOC_Os11g18080OsAffx.6363.1.S1_at2/1111+10143068..10148047retrotransposon, putative, centromere-specific
LOC_Os11g18100OsAffx.31036.1.S1_at9/1111+10159517..10161186hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28025.3.S1_at--771--8612Chr09:3300019..3300042 (24 bp)
TGGTGTTTCCACCTACACGGTTGGA
NONE
OsAffx.28025.3.S1_at--313--2171Chr11:10135399..10135423 (25 bp)
ACACGGTTGGATGGTTACCCCACTG
LOC_Os11g18070
OsAffx.28025.3.S1_at--375--6231Chr11:10135390..10135414 (25 bp)
GATGGTTACCCCACTGTTATTGGGT
LOC_Os11g18070
OsAffx.28025.3.S1_at--894--3871Chr11:10135377..10135401 (25 bp)
CTGTTATTGGGTGTCTACTTCTTCA
LOC_Os11g18070
OsAffx.28025.3.S1_at--42--10291Chr11:10135056..10135344 (25 bp)
TTTCCGCTTACACGGACGTCTTCGT
LOC_Os11g18070
OsAffx.28025.3.S1_at--677--8811Chr11:10134950..10134974 (25 bp)
TGTTGCTGCCGACTTATCTTCACGT
LOC_Os11g18070
OsAffx.28025.3.S1_at--977--431Chr11:10134935..10134959 (25 bp)
ATCTTCACGTCATCATGGTTGTGCA
LOC_Os11g18070
OsAffx.28025.3.S1_at--1140--7912Chr10:481227..481246 (20 bp)
GGTTGTGCAACTTTATCACCATTAT
NONE
OsAffx.28025.3.S1_at--460--9432Chr04:3134433..3134456 (24 bp)
TCGGCATGCACCACCAGATTCGACA
NONE
OsAffx.28025.3.S1_at--949--1252Chr11:11548431..11548455 (25 bp)
AGATTCGACACCGTGCTATTCTACT
NONE
OsAffx.28025.3.S1_at--247--2172Chr11:11548438..11548462 (25 bp)
ACACCGTGCTATTCTACTACAACAA
NONE
Target Sequence 
TGGTGTTTCCACCTACACGGTTGGATGGTTACCCCACTGTTATTGGGTGTCTACTTCTTCACCGACCGGCAGCCTCATCG
CCTCTGACTGGTGTTTCCGCTTACACGGACGTCTTCGTTTTCGTCATCATTCTACTTCTTCCATCACTGACTGGTGTTTT
TATCTTCACAACTACGCGTCTTCGCTACCGGTTTGCTTCTGTTGCTGCCGACTTATCTTCACGTCATCATGGTTGTGCAA
CTTTATCACCATTATGGGGCGACTTCATCTTCATTATCTTCGGCACCGGCAAATTCTATTGCCTCTACTTCGCAAGCTAT
TTCACCAACCACGACATCTCCAAGGGCCTCGACATCTCGGCATGCACCACCAGATTCGACACCGTGCTATTCTACTACAA
CAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28025.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis