Browse Element(s) Details


OsAffx.28031.1.S1_x_at

Description tigr:9634.m03938
TID=OsAffx.28031.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4097011/11hypothetical protein
LOC_Os02g308202/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40960Os.49270.1.S1_at11/116+24452134..24455498Zinc finger, C2H2 type family protein, expressed
LOC_Os06g40960OsAffx.29835.1.S1_x_at2/116+24452134..24455498Zinc finger, C2H2 type family protein, expressed
LOC_Os06g40960OsAffx.17417.1.S1_x_at2/116+24452134..24455498Zinc finger, C2H2 type family protein, expressed
LOC_Os06g40970OsAffx.28031.1.S1_x_at11/116+24459620..24462919hypothetical protein
LOC_Os06g40980OsAffx.19542.3.S1_x_at5/116+24467648..24471121retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g40990NANA6+24481081..24481806expressed protein
LOC_Os06g41000OsAffx.15869.1.S1_at11/116+24485126..24485512hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28031.1.S1_x_at--586--3771Chr06:24462378..24462424 (25 bp)
CTCTCTCACGGATGTGGGCGGCACC
LOC_Os06g40970
OsAffx.28031.1.S1_x_at--534--3771Chr06:24462380..24462426 (25 bp)
CTCTCACGGATGTGGGCGGCACCGC
LOC_Os06g40970
OsAffx.28031.1.S1_x_at--35--4591Chr06:24462526..24462550 (25 bp)
GCGAAGCGGCGTCGCCGAAGGAACG
LOC_Os06g40970
OsAffx.28031.1.S1_x_at--956--7531Chr06:24462558..24462582 (25 bp)
GTGGCTCACGGTCGGCCCGTGGCTC
LOC_Os06g40970
OsAffx.28031.1.S1_x_at--445--4531Chr06:24462572..24462596 (25 bp)
GCCCGTGGCTCGTGGCCCGTGCTGG
LOC_Os06g40970
OsAffx.28031.1.S1_x_at--639--9371Chr06:24462600..24462624 (25 bp)
TCGAGCTGGCGGTCGAGTACACGCA
LOC_Os06g40970
OsAffx.28031.1.S1_x_at--549--4511Chr06:24462644..24462668 (25 bp)
GCCGAGGAGACCAACGATGACGAGG
LOC_Os06g40970
OsAffx.28031.1.S1_x_at--1106--1792Chr06:24462710..24462734 (25 bp)
ACCGCCGCCAGTGTCAAGAAGAGGT
LOC_Os06g40970
OsAffx.28031.1.S1_x_at--51--7092Chr06:24462722..24462746 (25 bp)
GTCAAGAAGAGGTACAACCGCAACA
LOC_Os06g40970
OsAffx.28031.1.S1_x_at--626--1931Chr06:24462788..24462812 (25 bp)
ACGGAGTACGACGTGCTCGTCACTA
LOC_Os06g40970
OsAffx.28031.1.S1_x_at--1055--1171Chr06:24462792..24462815 (24 bp)
AGTACGACGTGCTCGTCACTAGCGG
LOC_Os06g40970
Target Sequence 
CTCTCTCACGGATGTGGGCGGCACCGCGAGCGGCAGCGGCGGGCACGGCGGCGGATGGGCGGAGGGCGGCGGTGCCCGGG
GGCGGTGGGCAGTGGTGCACGGGGGCGGACGGGGCGGAGGCGCGAGGCGAAGCGGCGTCGCCGAAGGAACGGCGGCCCGT
GGCTCACGGTCGGCCCGTGGCTCGTGGCCCGTGCTGGCGGTCGAGCTGGCGGTCGAGTACACGCAGAGCCCCGAGGAGGA
GGACGCCGAGGAGACCAACGATGACGAGGAGGCGGCGGCGGCGGAGCTGGAGCTCACACTCGCCGTGGGCACCGCCGCCA
GTGTCAAGAAGAGGTACAACCGCAACAAGCACCACTCCCCCGGGCAGAGCTTCTCGTCGTCGTCGTCGACGGAGTACGAC
GTGCTCGTCACTAGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28031.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis