Browse Element(s) Details


OsAffx.28052.1.S1_at

Description tigr:9634.m04036
TID=OsAffx.28052.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=strictosidine synthase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4182011/11Strictosidine synthase family protein
LOC_Os06g4185011/11Strictosidine synthase family protein
LOC_Os06g4183011/11Strictosidine synthase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41790Os.7462.1.S1_at11/116+25053772..25057838RNA recognition motif family protein, expressed
LOC_Os06g41800Os.55092.1.S1_at11/116+25065393..25070031Dihydroflavonol-4-reductase, putative, expressed
LOC_Os06g41810Os.15971.1.S1_at11/116+25072609..25075490NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g41820OsAffx.28052.1.S1_at11/116+25079896..25080933Strictosidine synthase family protein
LOC_Os06g41830OsAffx.28052.1.S1_at11/116+25084540..25085529Strictosidine synthase family protein
LOC_Os06g41840Os.6207.1.S1_s_at11/116+25086047..25089148NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g41850OsAffx.28052.1.S1_at11/116+25092245..25093297Strictosidine synthase family protein
LOC_Os06g41860NANA6+25097380..25098156hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009821biological_processalkaloid biosynthesis
GO:0016844molecular_functionstrictosidine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28052.1.S1_at--5--4013Chr06:25092724..25092748 (25 bp)
CGTGCCACTTCGCTTCACCAATGGG
LOC_Os06g41850
OsAffx.28052.1.S1_at--255--7713Chr06:25092748..25092772 (25 bp)
GGTGGACATTGATCAGGTTACCGGA
LOC_Os06g41850
OsAffx.28052.1.S1_at--368--2073Chr06:25092753..25092777 (25 bp)
ACATTGATCAGGTTACCGGAGATGT
LOC_Os06g41850
OsAffx.28052.1.S1_at--868--1513Chr06:25092791..25092815 (25 bp)
AGCAGCATGAACTACCAACGATCTC
LOC_Os06g41850
OsAffx.28052.1.S1_at--1052--5453Chr06:25092799..25092823 (25 bp)
GAACTACCAACGATCTCAGCACGAG
LOC_Os06g41850
OsAffx.28052.1.S1_at--367--9513Chr06:25092812..25092836 (25 bp)
TCTCAGCACGAGCAAGTCACGGCGA
LOC_Os06g41850
OsAffx.28052.1.S1_at--57--1873Chr06:25092819..25092843 (25 bp)
ACGAGCAAGTCACGGCGACCAAGGA
LOC_Os06g41850
OsAffx.28052.1.S1_at--350--8733Chr06:25092897..25092921 (25 bp)
TTCAATCCAACATAACCTACCCGAA
LOC_Os06g41850
OsAffx.28052.1.S1_at--982--9793Chr06:25092909..25092933 (25 bp)
TAACCTACCCGAACGGTGTCGCCAT
LOC_Os06g41850
OsAffx.28052.1.S1_at--316--3493Chr06:25093044..25093068 (25 bp)
CAGGCTATCCTGATAATGTGAGGCC
LOC_Os06g41850
OsAffx.28052.1.S1_at--268--10153Chr06:25093049..25093073 (25 bp)
TATCCTGATAATGTGAGGCCTGATG
LOC_Os06g41850
Target Sequence 
CGTGCCACTTCGCTTCACCAATGGGGTGGACATTGATCAGGTTACCGGAGATGTNTATTTCACNGANAGCAGCATGAACT
ACCAACGATCTCAGCACGAGCAAGTCACGGCGACCAAGGANTCGACNGGACGGCTNATGAAGTATGANCCACGAACNAAC
CAAGTCACCGTNCTTCAATCCAACATAACCTACCCGAACGGTGTCGCCATNNGNGNTGACCGAACACATNTGATNGTTGC
NNTGACNGGNCCATGTAAGTTGANNNGGNATTGGATNCNAGGNNCNAAGNNTGGNAANTCNGAACCATTTGNNGANNTGC
CAGGCTATCCTGATAATGTGAGGCCTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis