Browse Element(s) Details


OsAffx.28070.1.S1_at

Description tigr:9634.m04140
TID=OsAffx.28070.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4289011/11myb family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42840Os.15920.1.S1_at2/116+25744851..25745141hypothetical protein
LOC_Os06g42850Os.52613.1.S1_at10/116+25746268..25748947expressed protein
LOC_Os06g42860Os.53869.1.S1_at10/116+25753899..25756446ab-hydrolase associated lipase region family protein, expressed
LOC_Os06g42870NANA6+25757593..25758777transposon protein, putative, Pong sub-class
LOC_Os06g42880NANA6+25762645..25763073retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g42890OsAffx.28070.1.S1_at11/116+25766853..25768666myb family protein, putative
LOC_Os06g42900Os.40360.1.S1_at9/116+25772770..25776368hypothetical protein
LOC_Os06g42900Os.40360.1.S1_x_at7/116+25772770..25776368hypothetical protein
LOC_Os06g42900Os.40855.5.S1_x_at3/116+25772770..25776368hypothetical protein
LOC_Os06g42910Os.55188.1.S1_at11/116+25784601..25786651expressed protein
LOC_Os06g42920Os.55188.1.S1_at1/116+25791438..25792052hypothetical protein
LOC_Os06g42930OsAffx.5085.1.S1_at11/116+25792449..25793069hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28070.1.S1_at--1151--1331Chr06:25767466..25767490 (25 bp)
AGAGTGGTTCCAGAGTTGATGACAA
LOC_Os06g42890
OsAffx.28070.1.S1_at--621--2831Chr06:25767314..25767338 (25 bp)
AAGTTTAACTTGATGCATTGCTGGA
LOC_Os06g42890
OsAffx.28070.1.S1_at--194--4951Chr06:25767300..25767324 (25 bp)
GCATTGCTGGAATATCCTGAAGGAC
LOC_Os06g42890
OsAffx.28070.1.S1_at--949--8231Chr06:25767201..25767225 (25 bp)
GGCAAATTCAAGTCCTACATCAGTT
LOC_Os06g42890
OsAffx.28070.1.S1_at--172--1151Chr06:25767191..25767215 (25 bp)
AGTCCTACATCAGTTGAACCTGCTG
LOC_Os06g42890
OsAffx.28070.1.S1_at--643--5431Chr06:25767176..25767200 (25 bp)
GAACCTGCTGATCTTGATGTCTATT
LOC_Os06g42890
OsAffx.28070.1.S1_at--686--9071Chr06:25767144..25767168 (25 bp)
TGCTCAACCATCTGTAAGACCGGAT
LOC_Os06g42890
OsAffx.28070.1.S1_at--646--8211Chr06:25767108..25767132 (25 bp)
GGCAAAACAGAAGCTACGACAGGGT
LOC_Os06g42890
OsAffx.28070.1.S1_at--632--5391Chr06:25767074..25767098 (25 bp)
GAAGCAGTGGACTATCTGATGGAAA
LOC_Os06g42890
OsAffx.28070.1.S1_at--1140--2351Chr06:25766996..25767020 (25 bp)
AAAGCCTTTGCTCTGCAGGAAGAGA
LOC_Os06g42890
OsAffx.28070.1.S1_at--404--5871Chr06:25766962..25766986 (25 bp)
GAGCCTTTGCTCTGCAGGAAGAACG
LOC_Os06g42890
Target Sequence 
AGAGTGGTTCCAGAGTTGATGACAAGATCGCAAATGCATGTGAATTGTTTAAGGAGGAAGACAAGAAGCATAGGAAGTTT
AACTTGATGCATTGCTGGAATATCCTGAAGGACAAGCCCAAGTGGATGGACAATCGGAAGAAAGTTGGATGTGCCAAAAA
ACCAAGCAATAAGAAACAGAAGACAGTGGCAAATTCAAGTCCTACATCAGTTGAACCTGCTGATCTTGATGTCTATTGTT
CTGATGCTCAACCATCTGTAAGACCGGATGGAAAGAAGGCGGCAAAACAGAAGCTACGACAGGGTAGAACCATAGAAGCA
GTGGACTATCTGATGGAAAAGAAGAAAGAAGCTGATGTTGTGAGAGAGTTGAAGAAAGAAGAGATGTGCAAGAAAGCCTT
TGCTCTGCAGGAAGAGAGGTGCAAGAGAGCCTTTGCTCTGCAGGAAGAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28070.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis