Browse Element(s) Details


OsAffx.28133.1.S1_at

Description tigr:9634.m04519
TID=OsAffx.28133.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4646011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46430OsAffx.28132.1.S1_at8/116+28176435..28177924hypothetical protein
LOC_Os06g46440OsAffx.15954.1.S1_at11/116+28188529..28189857expressed protein
LOC_Os06g46450Os.21295.1.S1_at11/116+28189959..28195207Polyprenyl synthetase family protein, expressed
LOC_Os06g46460OsAffx.28133.1.S1_at11/116+28202819..28203372expressed protein
LOC_Os06g46470NANA6+28204290..28204619expressed protein
LOC_Os06g46480Os.55138.1.S1_x_at11/116+28209039..28227107Beige/BEACH domain containing protein, expressed
LOC_Os06g46480OsAffx.27256.1.S1_s_at11/116+28209039..28227107Beige/BEACH domain containing protein, expressed
LOC_Os06g46480Os.53992.1.S1_at11/116+28209039..28227107Beige/BEACH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28133.1.S1_at--1149--8091Chr06:28202850..28202874 (25 bp)
GGACGAAGCTGAGCTTTTCCAAGAA
LOC_Os06g46460
OsAffx.28133.1.S1_at--250--1531Chr06:28202899..28202923 (25 bp)
AGCAGGGCGTCCTTGTTGCTCCAGG
LOC_Os06g46460
OsAffx.28133.1.S1_at--728--10791Chr06:28202911..28202935 (25 bp)
TTGTTGCTCCAGGTCGTCCGGACCT
LOC_Os06g46460
OsAffx.28133.1.S1_at--361--5631Chr06:28203070..28203094 (25 bp)
GACACCATCGTGGAGGAAGATCACT
LOC_Os06g46460
OsAffx.28133.1.S1_at--663--5351Chr06:28203085..28203109 (25 bp)
GAAGATCACTCCAGCATGATGATGC
LOC_Os06g46460
OsAffx.28133.1.S1_at--287--711Chr06:28203100..28203124 (25 bp)
ATGATGATGCAAGAAGCCGCTACCG
LOC_Os06g46460
OsAffx.28133.1.S1_at--1073--851Chr06:28203205..28203229 (25 bp)
ATGGCTTACCGTTTCGGCGCCGCAG
LOC_Os06g46460
OsAffx.28133.1.S1_at--6--8411Chr06:28203220..28203244 (25 bp)
GGCGCCGCAGAAGAACATGGCCATG
LOC_Os06g46460
OsAffx.28133.1.S1_at--794--8451Chr06:28203237..28203261 (25 bp)
TGGCCATGGCGAAGCGTTGCTGATA
LOC_Os06g46460
OsAffx.28133.1.S1_at--851--3131Chr06:28203267..28203291 (25 bp)
AATTTTGAGAGCAGAGGCGTTGCGT
LOC_Os06g46460
OsAffx.28133.1.S1_at--523--6171Chr06:28203310..28203334 (25 bp)
GAGGATGATGCAGTCAGTTACTATT
LOC_Os06g46460
Target Sequence 
GGACGAAGCTGAGCTTTTCCAAGAAGAGAGGAGATCGACGATGATGGCGAGCAGGGCGTCCTTGTTGCTCCAGGTCGTCC
GGACCTCGTCCCGCTCGCGCAAGGGCGAGGGCGGCGTCGTCTTCTCCGAGGTCGCGCCGTGGCAGCAGCAGCAGCCCATC
TCGGCGCCCGCCGGCGCCGGCGCCGCCGGCATAGGCTCGCCGCGGCCGGCGGCGAAGCTGGACACCATCGTGGAGGAAGA
TCACTCCAGCATGATGATGCAAGAAGCCGCTACCGCCTTTCAGGCCGGCCCGTCTGCTGCTGCTGCTTCTTCTTCTTCTT
CTTCAGCGTCGTCGTCATCGTCAGCTCCGGCGGCCATGGCTTACCGTTTCGGCGCCGCAGAAGAACATGGCCATGGCGAA
GCGTTGCTGATAAGGTGAATTTTGAGAGCAGAGGCGTTGCGTGGGTTTGTGTGGCAGGCAGAGGATGATGCAGTCAGTTA
CTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis