Browse Element(s) Details


OsAffx.2817.1.S1_at

Description tigr:9630.m02995
TID=OsAffx.2817.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g312008/11hypothetical protein
LOC_Os12g188601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31170NANA2+18661025..18663965retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g31180NANA2+18664282..18669924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g31190Os.46012.2.S1_x_at9/112+18672422..18678375retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g31190Os.46012.3.S1_x_at7/112+18672422..18678375retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g31190Os.27088.1.A1_x_at5/112+18672422..18678375retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g31190Os.54691.1.S1_x_at1/112+18672422..18678375retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g31200OsAffx.2817.1.S1_at8/112+18685109..18685599hypothetical protein
LOC_Os02g31210OsAffx.12307.1.S1_at11/112+18687178..18688101hypothetical protein
LOC_Os02g31220Os.4783.1.S1_a_at11/112+18699833..18706481expressed protein
LOC_Os02g31220Os.20810.3.S1_x_at1/112+18699833..18706481expressed protein
LOC_Os02g31220OsAffx.28409.1.S1_at1/112+18699833..18706481expressed protein
LOC_Os02g31230Os.54546.1.S1_at10/112+18708235..18712077expressed protein
LOC_Os02g31230Os.57340.1.S1_at10/112+18708235..18712077expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2817.1.S1_at--686--8911Chr02:18685243..18685267 (25 bp)
TGACCTCGGGCACCTCTACCAGCTC
LOC_Os02g31200
OsAffx.2817.1.S1_at--534--9432Chr02:18685248..18685272 (25 bp)
TCGGGCACCTCTACCAGCTCTTCCT
LOC_Os02g31200
OsAffx.2817.1.S1_at--395--2631NONE
AACCTCCGTGTCAACGTCCTCAGAT
NONE
OsAffx.2817.1.S1_at--450--9291Chr02:18685290..18685562 (25 bp)
TCCGTGTCAACGTCCTCAGATCAAG
LOC_Os02g31200
OsAffx.2817.1.S1_at--561--4251Chr02:18685291..18685563 (25 bp)
CCGTGTCAACGTCCTCAGATCAAGT
LOC_Os02g31200
OsAffx.2817.1.S1_at--777--3991Chr02:18685292..18685564 (25 bp)
CGTGTCAACGTCCTCAGATCAAGTG
LOC_Os02g31200
OsAffx.2817.1.S1_at--289--7451Chr02:18685293..18685565 (25 bp)
GTGTCAACGTCCTCAGATCAAGTGG
LOC_Os02g31200
OsAffx.2817.1.S1_at--480--8691NONE
TGTCAACGTCCTCAGATCAAGTGGG
NONE
OsAffx.2817.1.S1_at--566--7091NONE
GTCAACGTCCTCAGATCAAGTGGGT
NONE
OsAffx.2817.1.S1_at--838--9711Chr02:18685296..18685568 (25 bp)
TCAACGTCCTCAGATCAAGTGGGTT
LOC_Os02g31200
OsAffx.2817.1.S1_at--706--3251Chr02:18685297..18685569 (25 bp)
CAACGTCCTCAGATCAAGTGGGTTT
LOC_Os02g31200
Target Sequence 
TGACCTCGGGCACCTCTACCAGCTCTTCCTCCATCTCTCCTTCAACCTCCGTGTCAACGTCCTCAGATCAAGTGGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2817.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis