Browse Element(s) Details


OsAffx.28217.1.S1_at

Description tigr:9635.m00001
TID=OsAffx.28217.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0101011/11
LOC_Os06g464101/11auxin response factor 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01010OsAffx.28217.1.S1_at11/117+631..1433NA
LOC_Os07g01010OsAffx.25970.2.S1_s_at1/117+631..1433NA
LOC_Os07g01020Os.11787.1.S1_at11/117+9940..11282pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os07g01020Os.36435.2.S1_x_at5/117+9940..11282pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os07g01030Os.56213.1.S1_at11/117+15819..19701glycosyl transferase, group 1 family protein, expressed
LOC_Os07g01030Os.27758.1.S1_at11/117+15819..19701glycosyl transferase, group 1 family protein, expressed
LOC_Os07g01040NANA7+25339..28172retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009630biological_processgravitropism
GO:0009638biological_processphototropism
GO:0009733biological_processresponse to auxin stimulus
GO:0009785biological_processblue light signaling pathway
GO:0009908biological_processflower development
GO:0040008biological_processregulation of growth
GO:0048366biological_processleaf development
GO:0048527biological_processlateral root development
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28217.1.S1_at--561--111Chr07:731..931 (25 bp)
ATTCATTTTCCCAAATGACCCAAGG
LOC_Os07g01010
OsAffx.28217.1.S1_at--91--691Chr07:923..945 (23 bp)
ATGACCCAAGGAATGCACATGCGGC
LOC_Os07g01010
OsAffx.28217.1.S1_at--349--2111Chr07:937..961 (25 bp)
ACATGCGGCAAGACATAACCTGTGG
LOC_Os07g01010
OsAffx.28217.1.S1_at--1050--2151Chr07:973..997 (25 bp)
ACAGCCAGTTTGTATTCAGGTTGGA
LOC_Os07g01010
OsAffx.28217.1.S1_at--728--6611Chr07:992..1013 (22 bp)
GTTGGATTTCAAGGACCGGCAGATG
LOC_Os07g01010
OsAffx.28217.1.S1_at--883--2771Chr07:1207..1231 (25 bp)
AAGAGCCGATGCATAGTCCTCAGCT
LOC_Os07g01010
OsAffx.28217.1.S1_at--950--9951Chr07:1259..1283 (25 bp)
TACGCCACCAATCCAAGTCATGCAG
LOC_Os07g01010
OsAffx.28217.1.S1_at--633--3332Chr07:1304..1328 (25 bp)
CACCACGGCCAAAACGTTCACTATT
LOC_Os07g01010
OsAffx.28217.1.S1_at--212--3313Chr07:3054..3078 (25 bp)
CACTATTATTAGCATCGAGATCATT
NONE
OsAffx.28217.1.S1_at--682--4072Chr07:1337..1361 (25 bp)
CGAGATCATTGCACACGAAGTTTGT
LOC_Os07g01010
OsAffx.28217.1.S1_at--707--3172Chr07:1379..1403 (25 bp)
AATTGTGTTTGTTTCCACTCAGACT
LOC_Os07g01010
Target Sequence 
ATTCATTTTCCCAAATGACCCAAGGAATGCACATGCGGCAAGACATAACCTGTGGAAATGTAAAATACAGCCAGTTTGTA
TTCAGGTTGGATTTCAAGGACCGGCAGATGATGATGAAAGACGAGGTCGTGGATGGTGAAGAGCCGATGCATAGTCCTCA
GCTCACCACACATGGCACCAATGCCAGCAATACGCCACCAATCCAAGTCATGCAGGATGTGGAGGCGGCGGCCACCACCA
CGGCCAAAACGTTCACTATTATTAGCATCGAGATCATTGCACACGAAGTTTGTGAACTTTATGACAAAAAAATTGTGTTT
GTTTCCACTCAGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28217.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis