Browse Element(s) Details


Os.56213.1.S1_at

Description gb:AK109623.1
DB_XREF= gi:32994832
TID=Os.56213.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56213 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-A12, full insert sequence.
FL= gb:AK109623.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0103011/11glycosyl transferase, group 1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01010OsAffx.28217.1.S1_at11/117+631..1433NA
LOC_Os07g01010OsAffx.25970.2.S1_s_at1/117+631..1433NA
LOC_Os07g01020Os.11787.1.S1_at11/117+9940..11282pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os07g01020Os.36435.2.S1_x_at5/117+9940..11282pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os07g01030Os.56213.1.S1_at11/117+15819..19701glycosyl transferase, group 1 family protein, expressed
LOC_Os07g01030Os.27758.1.S1_at11/117+15819..19701glycosyl transferase, group 1 family protein, expressed
LOC_Os07g01040NANA7+25339..28172retrotransposon protein, putative, unclassified
LOC_Os07g01050NANA7+29174..32035retrotransposon protein, putative, unclassified
LOC_Os07g01060Os.4950.2.S1_a_at11/117+34439..40588expressed protein
LOC_Os07g01070Os.53798.1.S1_at11/117+40956..42852Peptide transporter PTR2, putative, expressed
LOC_Os07g01080OsAffx.5169.1.S1_at10/117+43843..44453hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009247biological_processglycolipid biosynthesis
GO:0016036biological_processcellular response to phosphate starvation
GO:0046506biological_processsulfolipid biosynthesis
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0046510molecular_functionUDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56213.1.S1_at--437--8951Chr07:17175..17199 (25 bp)
TGAAATTACGGCTTTATCCACATAG
LOC_Os07g01030
Os.56213.1.S1_at--671--9771Chr07:17281..17305 (25 bp)
TAAGTAAGCTTCCAGCCATGTCCTA
LOC_Os07g01030
Os.56213.1.S1_at--820--771Chr07:17298..17322 (25 bp)
ATGTCCTATGCGGATACACCTTTAC
LOC_Os07g01030
Os.56213.1.S1_at--550--9991Chr07:17331..17355 (25 bp)
TAGCCAACTGATGCATTTCTCACTC
LOC_Os07g01030
Os.56213.1.S1_at--318--2151Chr07:17440..17464 (25 bp)
ACAGCAGGTTGTCATGGCTATACAT
LOC_Os07g01030
Os.56213.1.S1_at--158--10451Chr07:17479..17503 (25 bp)
TTACCTTTACCATCTTATTCTGACA
LOC_Os07g01030
Os.56213.1.S1_at--621--6831Chr07:17506..17530 (25 bp)
GTTTCACCTTCTTTTGCTATTACCA
LOC_Os07g01030
Os.56213.1.S1_at--1018--6251Chr07:17540..17564 (25 bp)
GATGGGTCATATTTCCAGCCAATAA
LOC_Os07g01030
Os.56213.1.S1_at--51--7351Chr07:17633..17657 (25 bp)
GTGCAAGGCTAACGTATGTAATCTC
LOC_Os07g01030
Os.56213.1.S1_at--114--8751Chr07:17649..17673 (25 bp)
TGTAATCTCCTCTGTGCTCAGTTGC
LOC_Os07g01030
Os.56213.1.S1_at--410--4831Chr07:17664..17688 (25 bp)
GCTCAGTTGCCTTTTTGCAGTACAG
LOC_Os07g01030
Target Sequence 
TGAAATTACGGCTTTATCCACATAGCAAACTGATTCTTCATAACCAATGGCAGTTATATACCGAGATATACATTCAGCTG
GCTGGTGAAGCCTATGTGGTTGATTATAAGTAAGCTTCCAGCCATGTCCTATGCGGATACACCTTTACATTAATACTAGC
CAACTGATGCATTTCTCACTCCCCAAAGAATTCTTGCACCGAGCTGCGGATCTCACACTGGTACCATCAGTTGCTATCGG
CAAGGATCTTCAAGCTGCCCGTGTTACAGCAGGTTGTCATGGCTATACATAGTTTTGTTTTTTTTTACCTTTACCATCTT
ATTCTGACATAGTTTCACCTTCTTTTGCTATTACCAATTTATTATGATGGGTCATATTTCCAGCCAATAAGATACGCCTT
TGGAACAAGGGTGTTGATTCAGAAAGCTTCCATCCCCGTTTCCGTAATGACGAAATGCGTGCAAGGCTAACGTATGTAAT
CTCCTCTGTGCTCAGTTGCCTTTTTGCAGTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56213.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis