Browse Element(s) Details


Os.4950.2.S1_a_at

Description gb:AK067928.1
DB_XREF= gi:32977946
TID=Os.4950.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4950 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033122A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013128H10, full insert sequence.
FL= gb:AK067928.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0106011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01020Os.11787.1.S1_at11/117+9940..11282pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os07g01020Os.36435.2.S1_x_at5/117+9940..11282pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os07g01030Os.56213.1.S1_at11/117+15819..19701glycosyl transferase, group 1 family protein, expressed
LOC_Os07g01030Os.27758.1.S1_at11/117+15819..19701glycosyl transferase, group 1 family protein, expressed
LOC_Os07g01040NANA7+25339..28172retrotransposon protein, putative, unclassified
LOC_Os07g01050NANA7+29174..32035retrotransposon protein, putative, unclassified
LOC_Os07g01060Os.4950.2.S1_a_at11/117+34439..40588expressed protein
LOC_Os07g01070Os.53798.1.S1_at11/117+40956..42852Peptide transporter PTR2, putative, expressed
LOC_Os07g01080OsAffx.5169.1.S1_at10/117+43843..44453hypothetical protein
LOC_Os07g01090Os.47446.1.S1_at10/117+47086..51511proline transporter, putative, expressed
LOC_Os07g01100Os.5996.1.S1_at11/117+55162..56516expressed protein
LOC_Os07g01110OsAffx.5170.1.S1_at11/117+57119..58949Multicopper oxidase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4950.2.S1_a_at--1067--1231Chr07:39683..39707 (25 bp)
AGTTGCGGGCCTTCTATGTCTGCGA
LOC_Os07g01060
Os.4950.2.S1_a_at--42--1551Chr07:39725..39749 (25 bp)
AGCTTGAAGCCCCTGATTCCAGAAA
LOC_Os07g01060
Os.4950.2.S1_a_at--1045--2471Chr07:39805..39829 (25 bp)
AACACCATCTGCAAGTAATCCCCAG
LOC_Os07g01060
Os.4950.2.S1_a_at--213--7071Chr07:39819..39843 (25 bp)
GTAATCCCCAGCTGGTGAACATTCT
LOC_Os07g01060
Os.4950.2.S1_a_at--528--9231Chr07:39852..39876 (25 bp)
TCCTTACTGACGTGCCTGAAATGAA
LOC_Os07g01060
Os.4950.2.S1_a_at--468--431Chr07:39966..39990 (25 bp)
ATCTTGGTGTCCATCCAGGCGACAG
LOC_Os07g01060
Os.4950.2.S1_a_at--885--891Chr07:39982..40006 (25 bp)
AGGCGACAGGCTAAGCTCATCTTGT
LOC_Os07g01060
Os.4950.2.S1_a_at--395--4831Chr07:39996..40020 (25 bp)
GCTCATCTTGTAGCGTCGATGTGAT
LOC_Os07g01060
Os.4950.2.S1_a_at--440--6611Chr07:40018..40042 (25 bp)
GATTGGACCTGGGTTTGCCGTCACA
LOC_Os07g01060
Os.4950.2.S1_a_at--969--9171Chr07:40033..40057 (25 bp)
TGCCGTCACAGAGGATGATGCATCT
LOC_Os07g01060
Os.4950.2.S1_a_at--293--7591Chr07:40068..40092 (25 bp)
GGGCTCACGCAACTTTTGCGGAATA
LOC_Os07g01060
Target Sequence 
AGTTGCGGGCCTTCTATGTCTGCGACTGTTACCCTGCTCCCTAGCTTGAAGCCCCTGATTCCAGAAACAGAATCTTTGGT
TGAGAGAAGCGCTAGGGAAACACTAATGAGGCTTATAGCCTCAACACCATCTGCAAGTAATCCCCAGCTGGTGAACATTC
TCCCTGCAGTCCTTACTGACGTGCCTGAAATGAATGTGAGGAAACATCTTGGTGTCCATCCAGGCGACAGGCTAAGCTCA
TCTTGTAGCGTCGATGTGATTGGACCTGGGTTTGCCGTCACAGAGGATGATGCATCTGTTGGAGATGGGGCTCACGCAAC
TTTTGCGGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4950.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis