Browse Element(s) Details


Os.53798.1.S1_at

Description gb:AK100112.1
DB_XREF= gi:32985321
TID=Os.53798.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53798 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023006A18, full insert sequence.
FL= gb:AK106932.1 gb:AK100112.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0107011/11Peptide transporter PTR2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01030Os.56213.1.S1_at11/117+15819..19701glycosyl transferase, group 1 family protein, expressed
LOC_Os07g01030Os.27758.1.S1_at11/117+15819..19701glycosyl transferase, group 1 family protein, expressed
LOC_Os07g01040NANA7+25339..28172retrotransposon protein, putative, unclassified
LOC_Os07g01050NANA7+29174..32035retrotransposon protein, putative, unclassified
LOC_Os07g01060Os.4950.2.S1_a_at11/117+34439..40588expressed protein
LOC_Os07g01070Os.53798.1.S1_at11/117+40956..42852Peptide transporter PTR2, putative, expressed
LOC_Os07g01080OsAffx.5169.1.S1_at10/117+43843..44453hypothetical protein
LOC_Os07g01090Os.47446.1.S1_at10/117+47086..51511proline transporter, putative, expressed
LOC_Os07g01100Os.5996.1.S1_at11/117+55162..56516expressed protein
LOC_Os07g01110OsAffx.5170.1.S1_at11/117+57119..58949Multicopper oxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53798.1.S1_at--613--1051Chr07:42382..42406 (25 bp)
AGGTGTTCGCCTTCATCGGCCAGAT
LOC_Os07g01070
Os.53798.1.S1_at--451--9451Chr07:42397..42421 (25 bp)
TCGGCCAGATCGACTTCTTCTACGA
LOC_Os07g01070
Os.53798.1.S1_at--51--5791Chr07:42432..42456 (25 bp)
GACGACATGCGCAGCACGTGCACCG
LOC_Os07g01070
Os.53798.1.S1_at--82--9111Chr07:42601..42625 (25 bp)
TGCTCGCCGCGCTCAGTGCTGTCAA
LOC_Os07g01070
Os.53798.1.S1_at--697--7971Chr07:42643..42667 (25 bp)
GGATCGCCAACTGGTACAGGTGCAA
LOC_Os07g01070
Os.53798.1.S1_at--126--8991Chr07:42683..42707 (25 bp)
TGAAGCAGCCGCTCAGACTTGAGGG
LOC_Os07g01070
Os.53798.1.S1_at--660--7631Chr07:42710..42734 (25 bp)
GGGACCCGGGAGATTATTACAATCT
LOC_Os07g01070
Os.53798.1.S1_at--708--3831Chr07:42733..42757 (25 bp)
CTGAATCAATTTCTCAGAACCAGTA
LOC_Os07g01070
Os.53798.1.S1_at--362--10031Chr07:42759..42783 (25 bp)
TAGTTACTGTTTTATTACAACCTCG
LOC_Os07g01070
Os.53798.1.S1_at--395--10491Chr07:42773..42797 (25 bp)
TTACAACCTCGAATCCCAAATGCTA
LOC_Os07g01070
Os.53798.1.S1_at--232--9091Chr07:42793..42817 (25 bp)
TGCTACAACATACATACTGCTATTT
LOC_Os07g01070
Target Sequence 
AGGTGTTCGCCTTCATCGGCCAGATCGACTTCTTCTACGACCAGGCGCCCGACGACATGCGCAGCACGTGCACCGCGCTC
TCGCTCACCTCCTCCGCGCTCGGCAACTACCTCAGCACGCTGCTCGTCGTCATCGTCACCGCCGCATCCACCAGGGGCGG
CGGCCTCGGATGGATCCCCGACAACCTCAACCGCGGCCACCTCGACTACTTCTTCTGGCTGCTCGCCGCGCTCAGTGCTG
TCAACTTCCTCGTCTACCTCTGGATCGCCAACTGGTACAGGTGCAAGACANTCACCACCACTGAAGCAGCCGCTCAGACT
TGAGGGCCGGGACCCGGGAGATTATTACAATCTGAATCAATTTCTCAGAACCAGTATTAGTTACTGTTTTATTACAACCT
CGAATCCCAAATGCTACAACATACATACTGCTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis