Browse Element(s) Details


OsAffx.5170.1.S1_at

Description tigr:9635.m00011
TID=OsAffx.5170.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Multicopper oxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0111011/11Multicopper oxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01060Os.4950.2.S1_a_at11/117+34439..40588expressed protein
LOC_Os07g01070Os.53798.1.S1_at11/117+40956..42852Peptide transporter PTR2, putative, expressed
LOC_Os07g01080OsAffx.5169.1.S1_at10/117+43843..44453hypothetical protein
LOC_Os07g01090Os.47446.1.S1_at10/117+47086..51511proline transporter, putative, expressed
LOC_Os07g01100Os.5996.1.S1_at11/117+55162..56516expressed protein
LOC_Os07g01110OsAffx.5170.1.S1_at11/117+57119..58949Multicopper oxidase family protein, expressed
LOC_Os07g01120OsAffx.28218.1.S1_at11/117+68389..69190hypothetical protein
LOC_Os07g01130OsAffx.5171.1.S1_at11/117+71461..80599expressed protein
LOC_Os07g01130Os.53615.1.S1_at11/117+71461..80599expressed protein
LOC_Os07g01130Os.6778.1.S1_at7/117+71461..80599expressed protein
LOC_Os07g01140Os.6208.1.S1_at11/117+80699..84181BTB/POZ domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5170.1.S1_at--280--9431Chr07:57589..57613 (25 bp)
TCGGGCGTGTACACGCGCGACTTCC
LOC_Os07g01110
OsAffx.5170.1.S1_at--59--4171Chr07:57555..57579 (25 bp)
CGCCGGTGATGTTCGACTTCACGAA
LOC_Os07g01110
OsAffx.5170.1.S1_at--974--6131Chr07:57548..57572 (25 bp)
GATGTTCGACTTCACGAACGCGGCG
LOC_Os07g01110
OsAffx.5170.1.S1_at--1019--4691Chr07:57526..57550 (25 bp)
GCGGCGGTGAACAGAAACATGTCGT
LOC_Os07g01110
OsAffx.5170.1.S1_at--669--4131Chr07:57399..57423 (25 bp)
CGCTGCATCTCCATGGGTTCAACTT
LOC_Os07g01110
OsAffx.5170.1.S1_at--139--811Chr07:57387..57411 (25 bp)
ATGGGTTCAACTTCTACGTGCTGGC
LOC_Os07g01110
OsAffx.5170.1.S1_at--124--8251Chr07:57358..57382 (25 bp)
GGCACAGGCAACTACTACTACCTGA
LOC_Os07g01110
OsAffx.5170.1.S1_at--260--3731Chr07:57347..57371 (25 bp)
CTACTACTACCTGATCCGCAAGAAG
LOC_Os07g01110
OsAffx.5170.1.S1_at--339--5351Chr07:57323..57347 (25 bp)
GAAGATCCGCAAGAACCTGGTCAAC
LOC_Os07g01110
OsAffx.5170.1.S1_at--268--2751Chr07:57313..57337 (25 bp)
AAGAACCTGGTCAACCCTCAGCAGC
LOC_Os07g01110
OsAffx.5170.1.S1_at--547--8551Chr07:57201..57225 (25 bp)
TGGAGGCACACCTTCCCTTCGGCTT
LOC_Os07g01110
Target Sequence 
TCGGGCGTGTACACGCGCGACTTCCCTGACCGACCGCCGGTGATGTTCGACTTCACGAACGCGGCGGCGGTGAACAGAAA
CATGTCGTTGATGGTGACGTCCAAGGGGACGAGGGTGAAGGCGCTGCGGTACAACGAGACGGTGGAGGTGGTGCTGCAGA
ACACGGCGGTGCTGGGGACGGAGAACCACCCGCTGCATCTCCATGGGTTCAACTTCTACGTGCTGGCGCAGGGCACAGGC
AACTACTACTACCTGATCCGCAAGAAGAAGATCCGCAAGAACCTGGTCAACCCTCAGCAGCGCAACACCATCGCCGTCCC
CCCCGGCGGCTGGGCGGTCATCCGGTTCACGGCGGACAACCCCGGCGTGTGGCTCATGCACTGCCACCTGGAGGCACACC
TTCCCTTCGGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5170.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis