Browse Element(s) Details


Os.6208.1.S1_at

Description gb:AK069837.1
DB_XREF= gi:32979861
TID=Os.6208.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6208 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023031F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023031F07, full insert sequence.
FL= gb:AK069837.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0114011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01100Os.5996.1.S1_at11/117+55162..56516expressed protein
LOC_Os07g01110OsAffx.5170.1.S1_at11/117+57119..58949Multicopper oxidase family protein, expressed
LOC_Os07g01120OsAffx.28218.1.S1_at11/117+68389..69190hypothetical protein
LOC_Os07g01130OsAffx.5171.1.S1_at11/117+71461..80599expressed protein
LOC_Os07g01130Os.53615.1.S1_at11/117+71461..80599expressed protein
LOC_Os07g01130Os.6778.1.S1_at7/117+71461..80599expressed protein
LOC_Os07g01140Os.6208.1.S1_at11/117+80699..84181BTB/POZ domain containing protein, expressed
LOC_Os07g01150Os.6797.1.S1_at11/117+86696..89060Sterol desaturase family protein, expressed
LOC_Os07g01160OsAffx.16022.1.S1_at11/117+99251..100003hypothetical protein
LOC_Os07g01170NANA7+103107..103547hypothetical protein
LOC_Os07g01180OsAffx.28219.1.S1_at11/117+107637..108485Zinc finger, C2H2 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6208.1.S1_at--282--6671Chr07:82713..82737 (25 bp)
GTTGCAACAACTTTAGCCCTAGCTG
LOC_Os07g01140
Os.6208.1.S1_at--575--3051Chr07:82664..82688 (25 bp)
AATCTGCTTGTCTGAAGTTCACTGC
LOC_Os07g01140
Os.6208.1.S1_at--423--3851Chr07:81110..81134 (25 bp)
CTGACTTGTTAGCTACTGTCGCAGT
LOC_Os07g01140
Os.6208.1.S1_at--311--6331Chr07:81075..81099 (25 bp)
GATGCTGCGTCATTCAACCGGAAGA
LOC_Os07g01140
Os.6208.1.S1_at--1109--911Chr07:81005..81029 (25 bp)
AGGCTAGTGATAGGCGCATCCGCAG
LOC_Os07g01140
Os.6208.1.S1_at--623--2971Chr07:80957..80981 (25 bp)
AATGTAGGCTTTCTTCTTGGTTCCT
LOC_Os07g01140
Os.6208.1.S1_at--467--9071Chr07:80924..80948 (25 bp)
TGCTTGCCATCAACTGTACACTATG
LOC_Os07g01140
Os.6208.1.S1_at--843--9731Chr07:80838..80862 (25 bp)
TAACCAACCTCTTGCCGTGTGAATA
LOC_Os07g01140
Os.6208.1.S1_at--413--9751Chr07:80815..80839 (25 bp)
TAATTTCCTATTTTGACTACGCCGT
LOC_Os07g01140
Os.6208.1.S1_at--832--9951Chr07:80798..80822 (25 bp)
TACGCCGTTTCGCAGCAGAGATTTT
LOC_Os07g01140
Os.6208.1.S1_at--364--1351Chr07:80782..80806 (25 bp)
AGAGATTTTAACCTTGCCAGTGGAT
LOC_Os07g01140
Target Sequence 
GTTGCAACAACTTTAGCCCTAGCTGAACAACATCATTGTACTCAGCTGAAATCTGCTTGTCTGAAGTTCACTGCTGTTCG
GGAAAATCTGGGAGCTGTGATGGAGACAGAAGGATTTAATTACTTGGAGGAGACATGCCCGTCCCTGCTATCTGACTTGT
TAGCTACTGTCGCAGTAGTGGATGATGATGCTGCGTCATTCAACCGGAAGAGGGGAGTCGGTGGTAACGAAGGAGCGAAT
CCTGTGGAGAGCGTGGAGGCTAGTGATAGGCGCATCCGCAGGAGGGTTTAGCCGGGTTAGAACTAATGTAGGCTTTCTTC
TTGGTTCCTCCTCTCTATGCTTGCCATCAACTGTACACTATGATCGTAGTTTGTGTGATGTGCTGTCATGTTATTAGTGG
TGAAAGTTTAATTTGGACNCCGTTAACCAACCTCTTGCCGTGTGAATAATTTCCTATTTTGACTACGCCGTTTCGCAGCA
GAGATTTTAACCTTGCCAGTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6208.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis