Browse Element(s) Details


OsAffx.16022.1.S1_at

Description tigr:9635.m00016
TID=OsAffx.16022.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0116011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01130OsAffx.5171.1.S1_at11/117+71461..80599expressed protein
LOC_Os07g01130Os.53615.1.S1_at11/117+71461..80599expressed protein
LOC_Os07g01130Os.6778.1.S1_at7/117+71461..80599expressed protein
LOC_Os07g01140Os.6208.1.S1_at11/117+80699..84181BTB/POZ domain containing protein, expressed
LOC_Os07g01150Os.6797.1.S1_at11/117+86696..89060Sterol desaturase family protein, expressed
LOC_Os07g01160OsAffx.16022.1.S1_at11/117+99251..100003hypothetical protein
LOC_Os07g01170NANA7+103107..103547hypothetical protein
LOC_Os07g01180OsAffx.28219.1.S1_at11/117+107637..108485Zinc finger, C2H2 type family protein
LOC_Os07g01190OsAffx.16024.1.S1_at9/117+111706..112622hypothetical protein
LOC_Os07g01200Os.52976.1.S1_at11/117+113743..116292Tetraacyldisaccharide 4 kinase, putative, expressed
LOC_Os07g01214OsAffx.16025.1.S1_s_at11/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01214Os.27454.1.S1_x_at11/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01214Os.27454.2.S1_at9/117+120554..126329transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16022.1.S1_at--1115--5491Chr07:99922..99946 (25 bp)
GAACAAGGACCTTCTAGACAACGCC
LOC_Os07g01160
OsAffx.16022.1.S1_at--990--2911Chr07:99894..99918 (25 bp)
AAGGAGGTCATTACGCCTTCTGCAC
LOC_Os07g01160
OsAffx.16022.1.S1_at--533--531Chr07:99865..99889 (25 bp)
ATCGCCCGTCTAACTCGAATGGGTT
LOC_Os07g01160
OsAffx.16022.1.S1_at--619--6811Chr07:99843..99867 (25 bp)
GTTTTCACCCGGAGAGACATGCCAG
LOC_Os07g01160
OsAffx.16022.1.S1_at--637--2491Chr07:99665..99689 (25 bp)
AACAGTCTCTGCCAGCTTGCAGCTC
LOC_Os07g01160
OsAffx.16022.1.S1_at--146--8751Chr07:99515..99539 (25 bp)
TGTACCACCTTGTAGGCCTTGCTCA
LOC_Os07g01160
OsAffx.16022.1.S1_at--918--3451Chr07:99469..99493 (25 bp)
CAGTCGTCATCACCATTGATGCCGG
LOC_Os07g01160
OsAffx.16022.1.S1_at--350--7231Chr07:99400..99424 (25 bp)
GTCCCAAGCCACGTCGGTTATTTGA
LOC_Os07g01160
OsAffx.16022.1.S1_at--262--7091Chr07:99388..99412 (25 bp)
GTCGGTTATTTGACCCTAGCCAAAT
LOC_Os07g01160
OsAffx.16022.1.S1_at--935--9971Chr07:99372..99396 (25 bp)
TAGCCAAATCTGTTGTGGAGACTTC
LOC_Os07g01160
OsAffx.16022.1.S1_at--707--8511Chr07:99357..99381 (25 bp)
TGGAGACTTCGGATCTAGCAACGGG
LOC_Os07g01160
Target Sequence 
GAACAAGGACCTTCTAGACAACGCCTCCAAGGAGGTCATTACGCCTTCTGCACCACCATCGCCCGTCTAACTCGAATGGG
TTTTCACCCGGAGAGACATGCCAGGGAGGGGAAGCCACCCCAGAGCTTCACCACCCGAACAGTCTCTGCCAGCTTGCAGC
TCTACCACTCCAGCGCCCCACCACCGGCCAGCGCAGCCCTCGGTACCATCGCGCCATCCTCGCGTAGCCCCAGGCGTTGG
CCTCCTACTGCCGCCGACGCTACCCGCGCAGGCCTCGCACAATCCTCTGTACCACCTTGTAGGCCTTGCTCAGCCACCCA
TGCTGGCCTCCCGCAGTCGTCATCACCATTGATGCCGGCCTCACGCTGCCACTGCCGTCACCCACTCCACCTTTCTCCCA
GCGTCCCAAGCCACGTCGGTTATTTGACCCTAGCCAAATCTGTTGTGGAGACTTCGGATCTAGCAACGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16022.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis