Browse Element(s) Details


OsAffx.16025.1.S1_s_at

Description tigr:9635.m00021
TID=OsAffx.16025.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=potassium transporter, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0121411/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01160OsAffx.16022.1.S1_at11/117+99251..100003hypothetical protein
LOC_Os07g01170NANA7+103107..103547hypothetical protein
LOC_Os07g01180OsAffx.28219.1.S1_at11/117+107637..108485Zinc finger, C2H2 type family protein
LOC_Os07g01190OsAffx.16024.1.S1_at9/117+111706..112622hypothetical protein
LOC_Os07g01200Os.52976.1.S1_at11/117+113743..116292Tetraacyldisaccharide 4 kinase, putative, expressed
LOC_Os07g01214OsAffx.16025.1.S1_s_at11/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01214Os.27454.1.S1_x_at11/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01214Os.27454.2.S1_at9/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01230Os.50516.1.S1_at11/117+127012..129670expressed protein
LOC_Os07g01240Os.54098.1.S1_at10/117+132461..141877expressed protein
LOC_Os07g01240OsAffx.17848.5.S1_x_at1/117+132461..141877expressed protein
LOC_Os07g01250Os.14528.1.S1_at11/117+145440..148483tobamovirus multiplication protein 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16025.1.S1_s_at--911--1151Chr07:121423..121447 (25 bp)
AGTCTAGTATTTGCTCTACTCCTTT
LOC_Os07g01214
OsAffx.16025.1.S1_s_at--452--3771Chr07:121436..121460 (25 bp)
CTCTACTCCTTTTCTATTACCTATT
LOC_Os07g01214
OsAffx.16025.1.S1_s_at--187--10272Chr07:121469..121493 (25 bp)
TTTGCTTTATTTAATTTCCACGATT
LOC_Os07g01214
OsAffx.16025.1.S1_s_at--351--10671Chr07:121484..121508 (25 bp)
TTCCACGATTAATCTGCATGCATGT
LOC_Os07g01214
OsAffx.16025.1.S1_s_at--191--251Chr07:121539..121563 (25 bp)
ATATACAGCTTTGCTAGCTAGCTAC
LOC_Os07g01214
OsAffx.16025.1.S1_s_at--372--10011Chr07:121553..121577 (25 bp)
TAGCTAGCTACTGTACATGTACCTG
LOC_Os07g01214
OsAffx.16025.1.S1_s_at--369--3511Chr07:121568..121592 (25 bp)
CATGTACCTGTACTCCTGTAGGTTT
LOC_Os07g01214
OsAffx.16025.1.S1_s_at--648--6931Chr07:121585..121609 (25 bp)
GTAGGTTTAGGTTGTTGCTCCTGCA
LOC_Os07g01214
OsAffx.16025.1.S1_s_at--182--8811Chr07:121597..121621 (25 bp)
TGTTGCTCCTGCAGATGGCTTGCTT
LOC_Os07g01214
OsAffx.16025.1.S1_s_at--172--8471Chr07:121612..121636 (25 bp)
TGGCTTGCTTGGCAAGACGCTGATC
LOC_Os07g01214
OsAffx.16025.1.S1_s_at--485--5531Chr07:121637..121661 (25 bp)
GAAACCGATCGATCAAACAAAATCA
LOC_Os07g01214
Target Sequence 
AGTCTAGTATTTGCTCTACTCCTTTTCTATTACCTATTAATATATTTTTGCTTTATTTAATTTCCACGATTAATCTGCAT
GCATGTATATATCATACATATATCCATGATACGTATATATACAGCTTTGCTAGCTAGCTACTGTACATGTACCTGTACTC
CTGTAGGTTTAGGTTGTTGCTCCTGCAGATGGCTTGCTTGGCAAGACGCTGATCGAAACCGATCGATCAAACAAAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16025.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis