Browse Element(s) Details


Os.52976.1.S1_at

Description gb:AK070220.1
DB_XREF= gi:32980244
TID=Os.52976.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52976 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023046L04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023046L04, full insert sequence.
FL= gb:AK070220.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0120011/11Tetraacyldisaccharide 4 kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01150Os.6797.1.S1_at11/117+86696..89060Sterol desaturase family protein, expressed
LOC_Os07g01160OsAffx.16022.1.S1_at11/117+99251..100003hypothetical protein
LOC_Os07g01170NANA7+103107..103547hypothetical protein
LOC_Os07g01180OsAffx.28219.1.S1_at11/117+107637..108485Zinc finger, C2H2 type family protein
LOC_Os07g01190OsAffx.16024.1.S1_at9/117+111706..112622hypothetical protein
LOC_Os07g01200Os.52976.1.S1_at11/117+113743..116292Tetraacyldisaccharide 4 kinase, putative, expressed
LOC_Os07g01214OsAffx.16025.1.S1_s_at11/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01214Os.27454.1.S1_x_at11/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01214Os.27454.2.S1_at9/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01230Os.50516.1.S1_at11/117+127012..129670expressed protein
LOC_Os07g01240Os.54098.1.S1_at10/117+132461..141877expressed protein
LOC_Os07g01240OsAffx.17848.5.S1_x_at1/117+132461..141877expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009245biological_processlipid A biosynthesis
GO:0016020cellular_componentmembrane
GO:0009029molecular_functiontetraacyldisaccharide 4'-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52976.1.S1_at--200--7011Chr07:114386..114410 (25 bp)
GTACTAGTCTAGATGTTGCAACGCA
LOC_Os07g01200
Os.52976.1.S1_at--738--5151Chr07:114369..114393 (25 bp)
GCAACGCAGCATTTTTGTCAATCTA
LOC_Os07g01200
Os.52976.1.S1_at--547--1131Chr07:114335..114359 (25 bp)
AGTGCTACCACTCTGTTGATTCTTA
LOC_Os07g01200
Os.52976.1.S1_at--512--7411Chr07:114306..114330 (25 bp)
GTGATTGTTTTTCTCTCGTTGTTGC
LOC_Os07g01200
Os.52976.1.S1_at--777--10091Chr07:114275..114299 (25 bp)
TAGGACCTGCAGCTTATCCAAGACA
LOC_Os07g01200
Os.52976.1.S1_at--584--691Chr07:114087..114111 (25 bp)
ATGACCGTGATCCAGATGTCCTTAG
LOC_Os07g01200
Os.52976.1.S1_at--844--5131Chr07:114052..114076 (25 bp)
GCAAAGGTTTGGGTGTTGTCGTCTT
LOC_Os07g01200
Os.52976.1.S1_at--950--7151Chr07:114027..114051 (25 bp)
GTCTGCAAATTATACCCCATGAGGG
LOC_Os07g01200
Os.52976.1.S1_at--732--6931Chr07:113853..113877 (25 bp)
GTAGGATCTGGTACTGCTGCATCTT
LOC_Os07g01200
Os.52976.1.S1_at--715--4971Chr07:113835..113859 (25 bp)
GCATCTTGTTCAGGATTGGTCGATC
LOC_Os07g01200
Os.52976.1.S1_at--106--10771Chr07:113780..113804 (25 bp)
TTGATCTAGTTGTATTTCCGTTGGA
LOC_Os07g01200
Target Sequence 
GTACTAGTCTAGATGTTGCAACGCAGCATTTTTGTCAATCTATAGTTTCTTAGTGCTACCACTCTGTTGATTCTTACATG
GTGATTGTTTTTCTCTCGTTGTTGCATACAATAGGACCTGCAGCTTATCCAAGACACGTTGAAGAAGCTTGTGTATCAGC
ACAAAAATAATGCTGTTGTCTTGGTTACAGAGAAGGATTATGACCGTGATCCAGATGTCCTTAGGGCACTGGATGCAAAG
GTTTGGGTGTTGTCGTCTTGTCTGCAAATTATACCCCATGAGGGACAAGGAGATGATGAATTTATGAGGAAAGTGAGGGA
GATTATTACAGCGAGTAGGCACGTGAAATTATAGGAGGGGGCCTAGCCAAGAGTTGCTGAACATTTAGTTAGAACCAGCT
GTAAAAGAATTTTGAGGCAAAACTATTTTGCCAGTAGGATCTGGTACTGCTGCATCTTGTTCAGGATTGGTCGATCAATT
CAATTCCTGTTGCAGAATATGCATTATTGATCTAGTTGTATTTCCGTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis