Browse Element(s) Details


Os.54098.1.S1_at

Description gb:AK101907.1
DB_XREF= gi:32987116
TID=Os.54098.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.54098 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071E12, full insert sequence.
FL= gb:AK101907.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0124010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01180OsAffx.28219.1.S1_at11/117+107637..108485Zinc finger, C2H2 type family protein
LOC_Os07g01190OsAffx.16024.1.S1_at9/117+111706..112622hypothetical protein
LOC_Os07g01200Os.52976.1.S1_at11/117+113743..116292Tetraacyldisaccharide 4 kinase, putative, expressed
LOC_Os07g01214OsAffx.16025.1.S1_s_at11/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01214Os.27454.1.S1_x_at11/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01214Os.27454.2.S1_at9/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01230Os.50516.1.S1_at11/117+127012..129670expressed protein
LOC_Os07g01240Os.54098.1.S1_at10/117+132461..141877expressed protein
LOC_Os07g01240OsAffx.17848.5.S1_x_at1/117+132461..141877expressed protein
LOC_Os07g01250Os.14528.1.S1_at11/117+145440..148483tobamovirus multiplication protein 3, putative, expressed
LOC_Os07g01260Os.53833.1.S1_at11/117+153181..156900RNA-binding protein homolog, putative, expressed
LOC_Os07g01270OsAffx.26147.4.S1_s_at11/117+159138..171211transposon protein, putative, unclassified
LOC_Os07g01270OsAffx.26147.2.S1_x_at9/117+159138..171211transposon protein, putative, unclassified
LOC_Os07g01270Os.44572.1.S1_x_at8/117+159138..171211transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54098.1.S1_at--1093--711Chr07:133850..133874 (25 bp)
ATGATAATATTGCTGCCCCATGGCC
LOC_Os07g01240
Os.54098.1.S1_at--492--871Chr07:133831..133855 (25 bp)
ATGGCCATCTTCTATGCAAGCATCG
LOC_Os07g01240
Os.54098.1.S1_at--593--511NONE
ATCGTCTTCTTCATGCAATAAATCT
NONE
Os.54098.1.S1_at--447--231Chr07:133093..133117 (25 bp)
ATATTCCAGAGAGACCTGCTGCGAC
LOC_Os07g01240
Os.54098.1.S1_at--212--1771Chr07:133080..133104 (25 bp)
ACCTGCTGCGACATCGGCACAAAAT
LOC_Os07g01240
Os.54098.1.S1_at--248--5491Chr07:132893..132917 (25 bp)
GAACAGACTGGAGCTTAGCCTACTT
LOC_Os07g01240
Os.54098.1.S1_at--230--1671Chr07:132877..132901 (25 bp)
AGCCTACTTATTTATCTGGGCACCC
LOC_Os07g01240
Os.54098.1.S1_at--1098--4731Chr07:132787..132811 (25 bp)
GCTGATTGGAATTGTCAACTGCGGA
LOC_Os07g01240
Os.54098.1.S1_at--475--7891Chr07:132727..132751 (25 bp)
GGTTACATGTGCTTTTTAGTTCCTG
LOC_Os07g01240
Os.54098.1.S1_at--900--10031Chr07:132711..132735 (25 bp)
TAGTTCCTGATAGCTGTTAGTGTAA
LOC_Os07g01240
Os.54098.1.S1_at--526--6771Chr07:132696..132720 (25 bp)
GTTAGTGTAATTTCTTGTAAGCCAT
LOC_Os07g01240
Target Sequence 
ATGATAATATTGCTGCCCCATGGCCATCTTCTATGCAAGCATCGTCTTCTTCATGCAATAAATCTGTTAATATTCCAGAG
AGACCTGCTGCGACATCGGCACAAAATGGTGTCAACCAGAACAGACTGGAGCTTAGCCTACTTATTTATCTGGGCACCCN
TTGTTGNTGCTATTTGGCTACAANTCTAGTCCAGTTAGCGAATTATTAATTTCAGATTCANGGAGAGCTGATTGGAATTG
TCAACTGCGGAGTTTTTGTGCTTGATGATCNCNATCAAAGTGTTGTAGGTTACATGTGCTTTTTAGTTCCTGATAGCTGT
TAGTGTAATTTCTTGTAAGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis