Browse Element(s) Details


OsAffx.16024.1.S1_at

Description tigr:9635.m00019
TID=OsAffx.16024.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g011909/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01150Os.6797.1.S1_at11/117+86696..89060Sterol desaturase family protein, expressed
LOC_Os07g01160OsAffx.16022.1.S1_at11/117+99251..100003hypothetical protein
LOC_Os07g01170NANA7+103107..103547hypothetical protein
LOC_Os07g01180OsAffx.28219.1.S1_at11/117+107637..108485Zinc finger, C2H2 type family protein
LOC_Os07g01190OsAffx.16024.1.S1_at9/117+111706..112622hypothetical protein
LOC_Os07g01200Os.52976.1.S1_at11/117+113743..116292Tetraacyldisaccharide 4 kinase, putative, expressed
LOC_Os07g01214OsAffx.16025.1.S1_s_at11/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01214Os.27454.1.S1_x_at11/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01214Os.27454.2.S1_at9/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01230Os.50516.1.S1_at11/117+127012..129670expressed protein
LOC_Os07g01240Os.54098.1.S1_at10/117+132461..141877expressed protein
LOC_Os07g01240OsAffx.17848.5.S1_x_at1/117+132461..141877expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16024.1.S1_at--563--9271Chr07:112568..112592 (25 bp)
TCCGTCGTAGGACAGCAGTGCAGCC
LOC_Os07g01190
OsAffx.16024.1.S1_at--785--9431Chr07:112535..112559 (25 bp)
TCTGGCAGCGGAGAGGCCGTTGGTG
LOC_Os07g01190
OsAffx.16024.1.S1_at--388--931Chr07:112486..112510 (25 bp)
AGGCATCGGCGCTGACCCTCGTGGT
LOC_Os07g01190
OsAffx.16024.1.S1_at--928--4531NONE
GACCCTCGTGGTCACCGGATTGGAA
NONE
OsAffx.16024.1.S1_at--166--7111NONE
GTCACCGGATTGGAAGCCGGCCAGT
NONE
OsAffx.16024.1.S1_at--385--811Chr07:111867..111891 (25 bp)
ATGGTGGTTTCAAATTGGGCGACGA
LOC_Os07g01190
OsAffx.16024.1.S1_at--558--9691Chr07:111858..111882 (25 bp)
TCAAATTGGGCGACGAACAACGGTG
LOC_Os07g01190
OsAffx.16024.1.S1_at--584--4393Chr05:23939499..23939609 (25 bp)
GCCAACAGTGACTACGCTTTTGGAT
NONE
OsAffx.16024.1.S1_at--1054--3451Chr07:111778..111802 (25 bp)
CAGTGACTACGCTTTTGGATATGGT
LOC_Os07g01190
OsAffx.16024.1.S1_at--1139--9931Chr07:111771..111795 (25 bp)
TACGCTTTTGGATATGGTAACCCTA
LOC_Os07g01190
OsAffx.16024.1.S1_at--200--3671Chr07:111767..111791 (25 bp)
CTTTTGGATATGGTAACCCTACTGA
LOC_Os07g01190
Target Sequence 
TCCGTCGTAGGACAGCAGTGCAGCCGCACTGGCTCTGGCAGCGGAGAGGCCGTTGGTGGGCGGCGAGGTGGTGGCGGAGC
GGAGGCATCGGCGCTGACCCTCGTGGTCACCGGATTGGAAGCCGGCCAGTGGAGGGGCGTCGGTCGGGTGTGGCGGAGGC
CATGTGCTGCCGATGTTTGGATGGTGGTTTCAAATTGGGCGACGAACAACGGTGGTAGGGTTGCAGAGGGTTCCAAGCGA
AAGCTTAGCCTAATGTTTCATTGGGCCAACAGTGACTACGCTTTTGGATATGGTAACCCTACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis