Browse Element(s) Details


Os.6797.1.S1_at

Description gb:AK071749.1
DB_XREF= gi:32981772
TID=Os.6797.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6797 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023112L07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023112L07, full insert sequence.
FL= gb:AK071749.1 gb:AK059667.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0115011/11Sterol desaturase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01120OsAffx.28218.1.S1_at11/117+68389..69190hypothetical protein
LOC_Os07g01130OsAffx.5171.1.S1_at11/117+71461..80599expressed protein
LOC_Os07g01130Os.53615.1.S1_at11/117+71461..80599expressed protein
LOC_Os07g01130Os.6778.1.S1_at7/117+71461..80599expressed protein
LOC_Os07g01140Os.6208.1.S1_at11/117+80699..84181BTB/POZ domain containing protein, expressed
LOC_Os07g01150Os.6797.1.S1_at11/117+86696..89060Sterol desaturase family protein, expressed
LOC_Os07g01160OsAffx.16022.1.S1_at11/117+99251..100003hypothetical protein
LOC_Os07g01170NANA7+103107..103547hypothetical protein
LOC_Os07g01180OsAffx.28219.1.S1_at11/117+107637..108485Zinc finger, C2H2 type family protein
LOC_Os07g01190OsAffx.16024.1.S1_at9/117+111706..112622hypothetical protein
LOC_Os07g01200Os.52976.1.S1_at11/117+113743..116292Tetraacyldisaccharide 4 kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016126biological_processsterol biosynthesis
GO:0016020cellular_componentmembrane
GO:0000254molecular_functionC-4 methylsterol oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6797.1.S1_at--1135--2231Chr07:88504..88528 (25 bp)
AAATTGTGAGCTCTTATCCCTTTGC
LOC_Os07g01150
Os.6797.1.S1_at--90--4451Chr07:88533..88557 (25 bp)
GCCTTATTCCCAATGAGCTTTCATG
LOC_Os07g01150
Os.6797.1.S1_at--309--2391Chr07:88599..88623 (25 bp)
AAACGGCAGGCAGGCGTCTTAACCA
LOC_Os07g01150
Os.6797.1.S1_at--16--3671Chr07:88616..88640 (25 bp)
CTTAACCACTGCTACCTTGATTAGG
LOC_Os07g01150
Os.6797.1.S1_at--449--791Chr07:88645..88669 (25 bp)
ATGTGTATGTATGCGGTGCTCCTCC
LOC_Os07g01150
Os.6797.1.S1_at--693--7311Chr07:88660..88684 (25 bp)
GTGCTCCTCCTGTTATTAGTTTTCT
LOC_Os07g01150
Os.6797.1.S1_at--327--151Chr07:88872..88896 (25 bp)
ATTACTGTATATATGGGCCCTGGCT
LOC_Os07g01150
Os.6797.1.S1_at--1070--4691Chr07:88894..88918 (25 bp)
GCTGGAGTGTTTCAGGATGTCCCAA
LOC_Os07g01150
Os.6797.1.S1_at--929--11Chr07:88919..88943 (25 bp)
ATTGTAAACGGCCTGGACCTGCCTG
LOC_Os07g01150
Os.6797.1.S1_at--240--4911Chr07:88967..88991 (25 bp)
GCTTCTTCATTGCAGTATCCATCTA
LOC_Os07g01150
Os.6797.1.S1_at--43--3331Chr07:88993..89017 (25 bp)
CACTCACTTGGTTTTAGTTTCTCGA
LOC_Os07g01150
Target Sequence 
AAATTGTGAGCTCTTATCCCTTTGCTGGCGCCTTATTCCCAATGAGCTTTCATGTGTTGTAGTACTGATGATGAGACATT
CCGTTGATTGAAGCAAAACGGCAGGCAGGCGTCTTAACCACTGCTACCTTGATTAGGGCACATGTGTATGTATGCGGTGC
TCCTCCTGTTATTAGTTTTCTTCATGCTGTAATTCTCCATTGTAATTTTGGACTGCAGAGTTGGGGGTAGAGGTGTCCTG
CGATTAATTTGAAGCAAAATAAAAGGTTAAGTTTTGCTGAGGATCGATGTTTGTTTGCACTGGTGTTGCTCAGATCGGGA
TATGACGACTTTGTGTCTTGTTTGTTGGGATGTTAGAAATGCAAAATTATTACTGTATATATGGGCCCTGGCTGGAGTGT
TTCAGGATGTCCCAAATTGTAAACGGCCTGGACCTGCCTGGCCCATCTAAAACGGGGCCTTTCGCTTCTTCATTGCAGTA
TCCATCTATCACTCACTTGGTTTTAGTTTCTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6797.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis