Browse Element(s) Details


Os.53615.1.S1_at

Description gb:AK073590.1
DB_XREF= gi:32983613
TID=Os.53615.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53615 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033048N09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033048N09, full insert sequence.
FL= gb:AK073590.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0113011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01090Os.47446.1.S1_at10/117+47086..51511proline transporter, putative, expressed
LOC_Os07g01100Os.5996.1.S1_at11/117+55162..56516expressed protein
LOC_Os07g01110OsAffx.5170.1.S1_at11/117+57119..58949Multicopper oxidase family protein, expressed
LOC_Os07g01120OsAffx.28218.1.S1_at11/117+68389..69190hypothetical protein
LOC_Os07g01130OsAffx.5171.1.S1_at11/117+71461..80599expressed protein
LOC_Os07g01130Os.53615.1.S1_at11/117+71461..80599expressed protein
LOC_Os07g01130Os.6778.1.S1_at7/117+71461..80599expressed protein
LOC_Os07g01140Os.6208.1.S1_at11/117+80699..84181BTB/POZ domain containing protein, expressed
LOC_Os07g01150Os.6797.1.S1_at11/117+86696..89060Sterol desaturase family protein, expressed
LOC_Os07g01160OsAffx.16022.1.S1_at11/117+99251..100003hypothetical protein
LOC_Os07g01170NANA7+103107..103547hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53615.1.S1_at--1125--2391Chr07:73626..73650 (25 bp)
AAAACACCGAATGTTGTTGCTCAAC
LOC_Os07g01130
Os.53615.1.S1_at--406--9091Chr07:73643..73667 (25 bp)
TGCTCAACAACCTCAGTCATTCATA
LOC_Os07g01130
Os.53615.1.S1_at--192--5991Chr07:73675..73699 (25 bp)
GAGACAGCATGGCTTTGTTGTGTCA
LOC_Os07g01130
Os.53615.1.S1_at--878--8671Chr07:73693..73717 (25 bp)
TGTGTCAACCAACCCACAAGTGTTT
LOC_Os07g01130
Os.53615.1.S1_at--852--611Chr07:73718..73742 (25 bp)
ATGTTTCTAGTTCTCCAGGATCTTG
LOC_Os07g01130
Os.53615.1.S1_at--99--1011Chr07:73734..73758 (25 bp)
AGGATCTTGTATGCAGTCAAACTTT
LOC_Os07g01130
Os.53615.1.S1_at--569--7091Chr07:73749..73773 (25 bp)
GTCAAACTTTGTTACTTCAGGTGCA
LOC_Os07g01130
Os.53615.1.S1_at--701--6771Chr07:73759..73783 (25 bp)
GTTACTTCAGGTGCAATCTACCATA
LOC_Os07g01130
Os.53615.1.S1_at--74--7191Chr07:73845..73869 (25 bp)
GTCTGTGGCTATTCTTTGTACTTCA
LOC_Os07g01130
Os.53615.1.S1_at--964--7011Chr07:73862..73886 (25 bp)
GTACTTCATATTCTAAGGACACTAG
LOC_Os07g01130
Os.53615.1.S1_at--389--8311Chr07:73886..73910 (25 bp)
GGCTAGAGTCTTCTCTACATTTAAT
LOC_Os07g01130
Target Sequence 
AAAACACCGAATGTTGTTGCTCAACAACCTCAGTCATTCATAATCATTAGAGACAGCATGGCTTTGTTGTGTCAACCAAC
CCACAAGTGTTTATGTTTCTAGTTCTCCAGGATCTTGTATGCAGTCAAACTTTGTTACTTCAGGTGCAATCTACCATATA
TTGCTTAGAATATGGAAAACAGAGAGCATCTGATCCGAAATGCAGGAAAACGACAGAAGGTCTGTGGCTATTCTTTGTAC
TTCATATTCTAAGGACACTAGGCTAGAGTCTTCTCTACATTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53615.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis