Browse Element(s) Details


OsAffx.5171.1.S1_at

Description tigr:9635.m00013
TID=OsAffx.5171.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=77097-79388
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0113011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01090Os.47446.1.S1_at10/117+47086..51511proline transporter, putative, expressed
LOC_Os07g01100Os.5996.1.S1_at11/117+55162..56516expressed protein
LOC_Os07g01110OsAffx.5170.1.S1_at11/117+57119..58949Multicopper oxidase family protein, expressed
LOC_Os07g01120OsAffx.28218.1.S1_at11/117+68389..69190hypothetical protein
LOC_Os07g01130OsAffx.5171.1.S1_at11/117+71461..80599expressed protein
LOC_Os07g01130Os.53615.1.S1_at11/117+71461..80599expressed protein
LOC_Os07g01130Os.6778.1.S1_at7/117+71461..80599expressed protein
LOC_Os07g01140Os.6208.1.S1_at11/117+80699..84181BTB/POZ domain containing protein, expressed
LOC_Os07g01150Os.6797.1.S1_at11/117+86696..89060Sterol desaturase family protein, expressed
LOC_Os07g01160OsAffx.16022.1.S1_at11/117+99251..100003hypothetical protein
LOC_Os07g01170NANA7+103107..103547hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5171.1.S1_at--482--4951Chr07:79583..79607 (25 bp)
GCATTATTTGATGTCTCACCTTCCA
LOC_Os07g01130
OsAffx.5171.1.S1_at--941--751Chr07:79593..79617 (25 bp)
ATGTCTCACCTTCCACTAAAGATGT
LOC_Os07g01130
OsAffx.5171.1.S1_at--141--10412Chr11:8797519..8797636 (24 bp)
TTGTTTGTTTTATCTTTTGGCAACG
NONE
OsAffx.5171.1.S1_at--1002--8151Chr07:79649..79673 (25 bp)
GGCAACGAAGAAGCGAATGGATTAT
LOC_Os07g01130
OsAffx.5171.1.S1_at--451--2971Chr07:79664..79688 (25 bp)
AATGGATTATTGACTGTATCTTCTT
LOC_Os07g01130
OsAffx.5171.1.S1_at--344--3292Chr07:79693..79717 (25 bp)
CAAATTAAAACAGTGCAGCATTGAT
LOC_Os07g01130
OsAffx.5171.1.S1_at--502--4131Chr07:80187..80345 (25 bp)
CGCTTTGTCATCCAGAATGACTTAC
LOC_Os07g01130
OsAffx.5171.1.S1_at--781--3051Chr07:80371..80395 (25 bp)
AATCACTACAACTACGGAAATCCAA
LOC_Os07g01130
OsAffx.5171.1.S1_at--70--5731Chr07:80400..80424 (25 bp)
GACTGATCAGAATCGATGTGATGCA
LOC_Os07g01130
OsAffx.5171.1.S1_at--1095--6251Chr07:80414..80438 (25 bp)
GATGTGATGCATCTTACAGGCTTCA
LOC_Os07g01130
OsAffx.5171.1.S1_at--240--651Chr07:80420..80444 (25 bp)
ATGCATCTTACAGGCTTCACAAGGC
LOC_Os07g01130
Target Sequence 
GCATTATTTGATGTCTCACCTTCCACTAAAGATGTTTTATTTATCTGTTTGTTTGTTTTATCTTTTGGCAACGAAGAAGC
GAATGGATTATTGACTGTATCTTCTTTTTACAAATTAAAACAGTGCAGCATTGATTCTCTCTTGGACAAAACCATAGCAC
ACATGCAGTTTCTCCAGTGTGTATCAGAGAAAGCCGATAAGATGGTGTGTGAGGAGTACGGTGTGTTTCTTGAGATTGCG
CATGTGATGAAGGACCTTGAGGTGACCATACTGAAAGGGTTGCTGGAGAGCCGTTCAGACAAGCTCTGGGCTCGCTTTGT
CATCCAGAATGACTTACATTGTGAAACGGAGGGAGTAGTAGTAATCACTACAACTACGGAAATCCAAAAGAGACTGATCA
GAATCGATGTGATGCATCTTACAGGCTTCACAAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5171.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis