Browse Element(s) Details


OsAffx.28218.1.S1_at

Description tigr:9635.m00012
TID=OsAffx.28218.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0112011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01080OsAffx.5169.1.S1_at10/117+43843..44453hypothetical protein
LOC_Os07g01090Os.47446.1.S1_at10/117+47086..51511proline transporter, putative, expressed
LOC_Os07g01100Os.5996.1.S1_at11/117+55162..56516expressed protein
LOC_Os07g01110OsAffx.5170.1.S1_at11/117+57119..58949Multicopper oxidase family protein, expressed
LOC_Os07g01120OsAffx.28218.1.S1_at11/117+68389..69190hypothetical protein
LOC_Os07g01130OsAffx.5171.1.S1_at11/117+71461..80599expressed protein
LOC_Os07g01130Os.53615.1.S1_at11/117+71461..80599expressed protein
LOC_Os07g01130Os.6778.1.S1_at7/117+71461..80599expressed protein
LOC_Os07g01140Os.6208.1.S1_at11/117+80699..84181BTB/POZ domain containing protein, expressed
LOC_Os07g01150Os.6797.1.S1_at11/117+86696..89060Sterol desaturase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28218.1.S1_at--417--5511Chr07:68419..68443 (25 bp)
GAACAATCCCCTAAGTCAATGCCAA
LOC_Os07g01120
OsAffx.28218.1.S1_at--337--9311Chr07:68425..68449 (25 bp)
TCCCCTAAGTCAATGCCAACAATTC
LOC_Os07g01120
OsAffx.28218.1.S1_at--12--2851Chr07:68556..68580 (25 bp)
AAGTCACCGCTCGTGCCCAATTGAG
LOC_Os07g01120
OsAffx.28218.1.S1_at--258--51Chr07:68575..68599 (25 bp)
ATTGAGTCTCCACCAGATATGCAGC
LOC_Os07g01120
OsAffx.28218.1.S1_at--1053--4511Chr07:68616..68640 (25 bp)
GCCGCCACCCATGAGGGAGACGAAG
LOC_Os07g01120
OsAffx.28218.1.S1_at--606--5011Chr07:68688..68712 (25 bp)
GCAGGAGGCCACCAGATTCGCTCTC
LOC_Os07g01120
OsAffx.28218.1.S1_at--856--91Chr07:68703..69088 (25 bp)
ATTCGCTCTCCACAGTATTGGTTGT
LOC_Os07g01120
OsAffx.28218.1.S1_at--605--31Chr07:69080..69104 (25 bp)
ATTGGTTGTGACGACAATGTCCCCA
LOC_Os07g01120
OsAffx.28218.1.S1_at--916--2951Chr07:69095..69119 (25 bp)
AATGTCCCCAAGACCACCGGCAGAG
LOC_Os07g01120
OsAffx.28218.1.S1_at--237--1371Chr07:69105..69129 (25 bp)
AGACCACCGGCAGAGGAAATGGCTG
LOC_Os07g01120
OsAffx.28218.1.S1_at--868--4751Chr07:69132..69156 (25 bp)
GCTGCTACTGGTGGAAGTTGACATC
LOC_Os07g01120
Target Sequence 
GAACAATCCCCTAAGTCAATGCCAACAATTCCGCCCACCATGCCTTCCCAGCCACCGGATCCACCTCCTCCACCACAACC
TGCCCTCTCCTTCGCCGCCCGCCGCTGGATCCGTCCCCTCCCTGTCGCCCATGCCCCAAGTCACCGCTCGTGCCCAATTG
AGTCTCCACCAGATATGCAGCCGCGCCCCTTGCCACCGCCGCCACCCATGAGGGAGACGAAGGGAGAGGAGAGGGATCTG
GGAAAGGTGGGAGAGATGCGGTGGGAGAGGCAGGAGGCCACCAGATTCGCTCTCCACAGTATTGGTTGTGACGACAATGT
CCCCAAGACCACCGGCAGAGGAAATGGCTGCTGCTGCTACTGGTGGAAGTTGACATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis