Browse Element(s) Details


Os.50516.1.S1_at

Description gb:AK121572.1
DB_XREF= gi:37991195
TID=Os.50516.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50516 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033035N11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033035N11, full insert sequence.
FL= gb:AK121572.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0123011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01170NANA7+103107..103547hypothetical protein
LOC_Os07g01180OsAffx.28219.1.S1_at11/117+107637..108485Zinc finger, C2H2 type family protein
LOC_Os07g01190OsAffx.16024.1.S1_at9/117+111706..112622hypothetical protein
LOC_Os07g01200Os.52976.1.S1_at11/117+113743..116292Tetraacyldisaccharide 4 kinase, putative, expressed
LOC_Os07g01214OsAffx.16025.1.S1_s_at11/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01214Os.27454.1.S1_x_at11/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01214Os.27454.2.S1_at9/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01230Os.50516.1.S1_at11/117+127012..129670expressed protein
LOC_Os07g01240Os.54098.1.S1_at10/117+132461..141877expressed protein
LOC_Os07g01240OsAffx.17848.5.S1_x_at1/117+132461..141877expressed protein
LOC_Os07g01250Os.14528.1.S1_at11/117+145440..148483tobamovirus multiplication protein 3, putative, expressed
LOC_Os07g01260Os.53833.1.S1_at11/117+153181..156900RNA-binding protein homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50516.1.S1_at--602--3811Chr07:127539..127563 (25 bp)
CTCCTCATCATACTAGCAATGCTGC
LOC_Os07g01230
Os.50516.1.S1_at--346--1171Chr07:127510..127534 (25 bp)
AGTAATAGCAACGACCATGGCGGGA
LOC_Os07g01230
Os.50516.1.S1_at--1060--7611Chr07:127435..127459 (25 bp)
GGGAACTTCAACACAGCGCTGATAC
LOC_Os07g01230
Os.50516.1.S1_at--1130--8251Chr07:127401..127425 (25 bp)
GGCAGTCAGCCATCAGCGAGAGCAG
LOC_Os07g01230
Os.50516.1.S1_at--518--6191Chr07:127376..127400 (25 bp)
GAGGAAGACAGCAGCTTCAGCTTCA
LOC_Os07g01230
Os.50516.1.S1_at--267--2491Chr07:127345..127369 (25 bp)
AACAGAGTCTTGCACAACGGCTTCT
LOC_Os07g01230
Os.50516.1.S1_at--110--6151Chr07:127313..127337 (25 bp)
GAGGTCCAGTACTGTGGTCGATCAA
LOC_Os07g01230
Os.50516.1.S1_at--558--8531Chr07:127191..127215 (25 bp)
TGGACGATCATCACACTGCAGACAA
LOC_Os07g01230
Os.50516.1.S1_at--859--2651Chr07:127168..127192 (25 bp)
AAGCCTTGCCAACCACAGATTATCA
LOC_Os07g01230
Os.50516.1.S1_at--758--9911Chr07:127114..127138 (25 bp)
TACGGACTACCTTATTACCAGTTCA
LOC_Os07g01230
Os.50516.1.S1_at--118--10071Chr07:127076..127100 (25 bp)
TAGTACATCTAGCTCCATCCATTGA
LOC_Os07g01230
Target Sequence 
CTCCTCATCATACTAGCAATGCTGCTTGCAGTAATAGCAACGACCATGGCGGGAGGAGCGGAGTAACGGAGGAGGAGGGC
GGGTCCGGCCGGAGCAGGCGGTCGGGGAACTTCAACACAGCGCTGATACGCAGGCTGTGGCAGTCAGCCATCAGCGAGAG
CAGGAGGAAGACAGCAGCTTCAGCTTCAGGGAGAAACAGAGTCTTGCACAACGGCTTCTCACCATCGAGGTCCAGTACTG
TGGTCGATCAAGCAGGATCAGCAGCTATGGAGAAGGAGAATGAGATTAATAGCAAGAATAAGAAAAAGAAGAAGAAGAGC
CTGATGGAGAAGCTGATGGAGGCGAGGATGGACGATCATCACACTGCAGACAAGCCTTGCCAACCACAGATTATCAATTA
TGCAAGCTAACAACACACAGATTATTACGGACTACCTTATTACCAGTTCAAAATGCACGGATATAGTACATCTAGCTCCA
TCCATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50516.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis