Browse Element(s) Details


Os.27454.1.S1_x_at

Description gb:AK099800.1
DB_XREF= gi:32985009
TID=Os.27454.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27454 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013097P15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013097P15, full insert sequence.
FL= gb:AK099800.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0121411/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01160OsAffx.16022.1.S1_at11/117+99251..100003hypothetical protein
LOC_Os07g01170NANA7+103107..103547hypothetical protein
LOC_Os07g01180OsAffx.28219.1.S1_at11/117+107637..108485Zinc finger, C2H2 type family protein
LOC_Os07g01190OsAffx.16024.1.S1_at9/117+111706..112622hypothetical protein
LOC_Os07g01200Os.52976.1.S1_at11/117+113743..116292Tetraacyldisaccharide 4 kinase, putative, expressed
LOC_Os07g01214OsAffx.16025.1.S1_s_at11/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01214Os.27454.1.S1_x_at11/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01214Os.27454.2.S1_at9/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01230Os.50516.1.S1_at11/117+127012..129670expressed protein
LOC_Os07g01240Os.54098.1.S1_at10/117+132461..141877expressed protein
LOC_Os07g01240OsAffx.17848.5.S1_x_at1/117+132461..141877expressed protein
LOC_Os07g01250Os.14528.1.S1_at11/117+145440..148483tobamovirus multiplication protein 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27454.1.S1_x_at--523--9231Chr07:125652..125676 (25 bp)
TCCTCAAGAAGCTCGTCGTCAACTA
LOC_Os07g01214
Os.27454.1.S1_x_at--359--8091Chr07:125736..125760 (25 bp)
GGAGCCAACTCCTCAAAGTCGGCAT
LOC_Os07g01214
Os.27454.1.S1_x_at--553--2851Chr07:125751..125775 (25 bp)
AAGTCGGCATGTCCTACGAGATCTG
LOC_Os07g01214
Os.27454.1.S1_x_at--675--3591Chr07:125801..125825 (25 bp)
CATTCCTTCATAAGCAAACCTTCCT
LOC_Os07g01214
Os.27454.1.S1_x_at--408--9571Chr07:125843..125867 (25 bp)
TCTTCTTCCTTCTTCATTATTTCAA
LOC_Os07g01214
Os.27454.1.S1_x_at--1150--10191Chr07:125860..125884 (25 bp)
TATTTCAATCTCGATCCATCTACTC
LOC_Os07g01214
Os.27454.1.S1_x_at--590--571Chr07:125873..125897 (25 bp)
ATCCATCTACTCTACTACTAGTTCT
LOC_Os07g01214
Os.27454.1.S1_x_at--1114--9891Chr07:125888..125912 (25 bp)
TACTAGTTCTTCATTTCTTCTCTGC
LOC_Os07g01214
Os.27454.1.S1_x_at--603--191Chr07:125900..125924 (25 bp)
ATTTCTTCTCTGCTACTCCAGTATA
LOC_Os07g01214
Os.27454.1.S1_x_at--1124--5191Chr07:126132..126156 (25 bp)
GAATTGATCCAGGTTCTTCCTACAT
LOC_Os07g01214
Os.27454.1.S1_x_at--999--6591Chr07:126208..126232 (25 bp)
GATTGTCAATTCCTTGTTGCAACCT
LOC_Os07g01214
Target Sequence 
TCCTCAAGAAGCTCGTCGTCAACTACGCCTACTCCTTCCTCCGCCGCAACTGCAGGCAGGGCGACAAGATGCTCGCCATC
CCCAGGAGCCAACTCCTCAAAGTCGGCATGTCCTACGAGATCTGATCGATCTCTCATGCATCCCCCATCCATTCCTTCAT
AAGCAAACCTTCCTTAATTATTGCTTTCATTTCTTCTTCCTTCTTCATTATTTCAATCTCGATCCATCTACTCTACTACT
AGTTCTTCATTTCTTCTCTGCTACTCCAGTATACTCCACTGGTTATGGTTAGTACTAGCAGCTAAGCTAAGCTAAGCTAG
TTTCATAACTATAAGTGCCTTTATTGATGCATGCATGCCAGTATATATAGTGATCATATATATACATACACATATACTAG
CGGAGGAGTATGTAACTAGTTGCTAGTATTGCTGATTGATAATTAATTGTACAATTGGATGCATGGGATGGGAGACCACT
GAATTGATCCAGGTTCTTCCTACATGTTTGTATGTATGTATGCTTGTAGAAGCTTGCACAGATATATTGATCATATGATT
GTCAATTCCTTGTTGCAACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27454.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis