Browse Element(s) Details


OsAffx.28220.1.S1_s_at

Description gb:NM_186132.1
DB_XREF= gi:34899349
TID=OsAffx.28220.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (P0446F04.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0128011/11hypothetical protein
LOC_Os04g4464010/11Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os01g7184010/11retrotransposon protein, putative, unclassified, expressed
LOC_Os04g256808/11Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os02g374201/11Ras-related protein Rab-2-B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01250Os.14528.1.S1_at11/117+145440..148483tobamovirus multiplication protein 3, putative, expressed
LOC_Os07g01260Os.53833.1.S1_at11/117+153181..156900RNA-binding protein homolog, putative, expressed
LOC_Os07g01270OsAffx.26147.4.S1_s_at11/117+159138..171211transposon protein, putative, unclassified
LOC_Os07g01270OsAffx.26147.2.S1_x_at9/117+159138..171211transposon protein, putative, unclassified
LOC_Os07g01270Os.44572.1.S1_x_at8/117+159138..171211transposon protein, putative, unclassified
LOC_Os07g01280OsAffx.28220.1.S1_s_at11/117+172041..175550hypothetical protein
LOC_Os07g01290NANA7+177299..179836transposon protein, putative, Mutator sub-class
LOC_Os07g01300Os.51588.1.S1_x_at11/117+180814..181542expressed protein
LOC_Os07g01300Os.51588.1.S1_at11/117+180814..181542expressed protein
LOC_Os07g01300OsAffx.8749.1.S1_at4/117+180814..181542expressed protein
LOC_Os07g01310Os.40446.1.S1_at9/117+189343..194728Glutamate receptor 3.4 precursor, putative, expressed
LOC_Os07g01320Os.6121.1.S1_at11/117+194377..198122expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006888biological_processER to Golgi vesicle-mediated transport
GO:0016049biological_processcell growth
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28220.1.S1_s_at--846--9893Chr01:41941897..41941921 (25 bp)
TACTCTCTGTTGTGCTCAGGAAAAT
LOC_Os01g71840
OsAffx.28220.1.S1_s_at--100--6754Chr04:14869565..14869589 (25 bp)
GTTCATTCGAAGACTGAGCCCTCAT
LOC_Os04g25680
OsAffx.28220.1.S1_s_at--408--1674Chr04:14869581..14869605 (25 bp)
AGCCCTCATATAGCAGATTCTCAAC
LOC_Os04g25680
OsAffx.28220.1.S1_s_at--351--9554Chr04:14869624..14869648 (25 bp)
TCTATCTTCTTTATCTCCTGATCAG
LOC_Os04g25680
OsAffx.28220.1.S1_s_at--62--6754Chr02:22594614..22594728 (24 bp)
GTTCATCATATTTTGGGTCTGCCTA
LOC_Os02g37420
OsAffx.28220.1.S1_s_at--485--8034Chr04:14869844..14869868 (25 bp)
GGAGTTCCCAACTGATTGTGATGCT
LOC_Os04g25680
OsAffx.28220.1.S1_s_at--841--2834Chr04:14869890..14869914 (25 bp)
AAGTTTGGCAAGAGCGCTCTTCCAT
LOC_Os04g25680
OsAffx.28220.1.S1_s_at--511--3754Chr04:14869906..14869930 (25 bp)
CTCTTCCATCTGTGAGATTCTTTGG
LOC_Os04g25680
OsAffx.28220.1.S1_s_at--307--5574Chr04:14869945..14869969 (25 bp)
GAAAGGAAACTCTCTCTGATGATGA
LOC_Os04g25680
OsAffx.28220.1.S1_s_at--662--8274Chr04:14870000..14870024 (25 bp)
GGCTTGTTTTCTTTGTCCAAACTCT
LOC_Os04g25680
OsAffx.28220.1.S1_s_at--818--3271Chr07:172072..172096 (25 bp)
CAAACTCTTCTTTGGTCCTTAGCAC
LOC_Os07g01280
Target Sequence 
TACTCTCTGTTGTGCTCAGGAAAATGGATAAGAAATCTAAAGTTCATTCGAAGACTGAGCCCTCATATAGCAGATTCTCA
ACAAAATATTTCTCAACAGTTCTATCTTCTTTATCTCCTGATCAGAAGCGTATTATTGGTGACTATGGTTTTAATTCTTT
GCTGATGTTTGACAATGCTTATGTCCCAAACAAATTTTCTTCTTGGATTGCAAATCATGTTGATGTGAAGTCTTCTCAAA
TTGTTTTGAAAGATAAAGTCATTGCAATTAATAAAGAATGTGTTCATCATATTTTGGGTCTGCCTATTGGTGGTATGGAG
TTCCCAACTGATTGTGATGCTGGAAAGTCTTTTATTCTTTCAAAGTTTGGCAAGAGCGCTCTTCCATCTGTGAGATTCTT
TGGTGATAAGTTCATCCGAAAGGAAACTCTCTCTGATGATGAAGTTATTACTTCATTTTTGATTGTTGCAATGGCTTGTT
TTCTTTGTCCAAACTCTTCTTTGGTCCTTAGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28220.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis