Browse Element(s) Details


OsAffx.28261.1.S1_at

Description tigr:9635.m00363
TID=OsAffx.28261.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0432011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04270NANA7+1889148..1889533hypothetical protein
LOC_Os07g04280OsAffx.5203.1.S1_at11/117+1891293..1892384expressed protein
LOC_Os07g04290OsAffx.28260.1.S1_at10/117+1893530..1894637hypothetical protein
LOC_Os07g04300OsAffx.5204.1.S1_at11/117+1895915..1896256hypothetical protein
LOC_Os07g04310NANA7+1901420..1903881hypothetical protein
LOC_Os07g04320OsAffx.28261.1.S1_at11/117+1904633..1905040hypothetical protein
LOC_Os07g04330Os.11006.1.S1_at10/117+1910380..1912548expressed protein
LOC_Os07g04330Os.38152.1.S1_at1/117+1910380..1912548expressed protein
LOC_Os07g04340Os.57039.1.S1_at11/117+1924015..1925341expressed protein
LOC_Os07g04350Os.40384.1.S1_at11/117+1926814..1928720expressed protein
LOC_Os07g04350OsAffx.5206.1.S1_s_at11/117+1926814..1928720expressed protein
LOC_Os07g04360Os.41695.4.S1_x_at2/117+1929721..1933659Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28261.1.S1_at--220--8091Chr07:1904917..1904941 (25 bp)
GGAGCCGAGGTGGACTCAGTACCTT
LOC_Os07g04320
OsAffx.28261.1.S1_at--974--1991Chr07:1904904..1904928 (25 bp)
ACTCAGTACCTTCCCAGGTGGAGGT
LOC_Os07g04320
OsAffx.28261.1.S1_at--252--4632Chr05:17606511..17606535 (25 bp)
GCGATGGTGCACCTTCGCCTGCAAA
NONE
OsAffx.28261.1.S1_at--1099--1732Chr05:17606521..17606545 (25 bp)
ACCTTCGCCTGCAAATGGTTGTGGA
NONE
OsAffx.28261.1.S1_at--965--8631Chr07:1904763..1904787 (25 bp)
TGTGGAGAACGTCGAAGAACAACCG
LOC_Os07g04320
OsAffx.28261.1.S1_at--613--5372Chr05:17606554..17606577 (24 bp)
GAAGAACAACCGAACCCAAGAGGAT
NONE
OsAffx.28261.1.S1_at--220--1052Chr05:17606579..17606603 (25 bp)
AGGTGAACCAGATTGGACGCCGTCC
NONE
OsAffx.28261.1.S1_at--691--1252Chr05:17606588..17606612 (25 bp)
AGATTGGACGCCGTCCGGAACAGCG
NONE
OsAffx.28261.1.S1_at--605--1731Chr07:1904687..1904711 (25 bp)
ACCTTTGGACGCTCCTCAGAAGTGT
LOC_Os07g04320
OsAffx.28261.1.S1_at--557--1831Chr07:1904679..1904703 (25 bp)
ACGCTCCTCAGAAGTGTGTCCAAGT
LOC_Os07g04320
OsAffx.28261.1.S1_at--859--7453Chr05:17606641..17606665 (25 bp)
GTGTGTCCAAGTCTGGACGCTATTG
NONE
Target Sequence 
GGAGCCGAGGTGGACTCAGTACCTTCCCAGGTGGAGGTGGAAGTCGGTGCGGGCCACCCAGACGTCGAGGTGGACAGCGG
TGGTGGCTCCTCTGCCCTAGCCGTGCAGGGAGGAGAGGAAAGCCGGCGATGGTGCACCTTCGCCTGCAAATGGTTGTGGA
GAACGTCGAAGAACAACCGAACCCAAGAGGATGAGGTGAACCAGATTGGACGCCGTCCGGAACAGCGTCCACCTTTGGAC
GCTCCTCAGAAGTGTGTCCAAGTCTGGACGCTATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis