Browse Element(s) Details


OsAffx.28265.1.S1_at

Description tigr:9635.m00393
TID=OsAffx.28265.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0462011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04570OsAffx.5210.1.S1_at10/117+2031013..2032041RNA recognition motif family protein
LOC_Os07g04580Os.57389.1.S1_at10/117+2033472..2035042Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os07g04590OsAffx.28270.2.S1_at11/117+2040785..2042485hypothetical protein
LOC_Os07g04600OsAffx.5211.1.S1_at11/117+2044857..2047490hypothetical protein
LOC_Os07g04610OsAffx.16083.1.S1_at11/117+2048397..2049157hypothetical protein
LOC_Os07g04620OsAffx.28265.1.S1_at11/117+2050708..2051394hypothetical protein
LOC_Os07g04630NANA7+2052778..2053215hypothetical protein
LOC_Os07g04650OsAffx.28267.1.S1_at11/117+2060481..2062147Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os07g04660OsAffx.16085.1.S1_at11/117+2063509..2064003ABC transporter family protein, putative
LOC_Os07g04670OsAffx.28268.1.S1_at11/117+2065644..2066474hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28265.1.S1_at--387--5651Chr07:2051229..2051253 (25 bp)
GACAGCAGCAGGATCGCAAGCCACC
LOC_Os07g04620
OsAffx.28265.1.S1_at--961--3231Chr07:2051213..2051237 (25 bp)
CAAGCCACCTCGTCGAGTTGGAGGA
LOC_Os07g04620
OsAffx.28265.1.S1_at--766--3771Chr07:2051205..2051229 (25 bp)
CTCGTCGAGTTGGAGGACACCGGCC
LOC_Os07g04620
OsAffx.28265.1.S1_at--277--8411Chr07:2050971..2050995 (25 bp)
GGCCGCGTCAAGTCGGGATCGTCAT
LOC_Os07g04620
OsAffx.28265.1.S1_at--984--7071Chr07:2050965..2050989 (25 bp)
GTCAAGTCGGGATCGTCATCCGCCT
LOC_Os07g04620
OsAffx.28265.1.S1_at--996--7711Chr07:2050881..2050905 (25 bp)
GGTGGCGGTTTCTCCTCGCGACACG
LOC_Os07g04620
OsAffx.28265.1.S1_at--545--1451Chr07:2050835..2050859 (25 bp)
AGAAGCAGCAGCGTGTGATGGCAAT
LOC_Os07g04620
OsAffx.28265.1.S1_at--936--8871Chr07:2050820..2050844 (25 bp)
TGATGGCAATAAGGCGGCAGCAGCA
LOC_Os07g04620
OsAffx.28265.1.S1_at--57--9871Chr07:2050793..2050817 (25 bp)
TACAGCTTGCGATGGAAATCTGGCG
LOC_Os07g04620
OsAffx.28265.1.S1_at--40--10711Chr07:2050787..2050811 (25 bp)
TTGCGATGGAAATCTGGCGGCAGCA
LOC_Os07g04620
OsAffx.28265.1.S1_at--1073--1191Chr07:2050754..2050778 (25 bp)
AGTTAGCGGCGGCAATGTGGCAGCA
LOC_Os07g04620
Target Sequence
GACAGCAGCAGGATCGCAAGCCACCTCGTCGAGTTGGAGGACACCGGCCGGAGGCGGAGCGCCGCCTTCGTCCCCAGCCG
CCACGACCCCATCTACGTCCCCATCGGCCGCCCCAATCCCTTGGGCCCCATCGGCCATCGGGAGGACTACTACTCCGGCT
CCGGCAGCGCCACCGCCTTCTTCCCCAGCAGCCGCGACCCCGTCCATGTCCCCATCGGCCGCGACACCGCCTTACCCCCA
ATCGGCCATCCTTCCCAGGGCCGCGTCAAGTCGGGATCGTCATCCGCCTCCGCCGGCGACGACATGATCAACTCCTCCTC
CGCCGCCGTCAGCCACTCAACCGGCGCCGGTGGCGGTTTCTCCTCGCGACACGCCCCTGCTTCCGACGAGGCGAAGAAGC
AGCAGCGTGTGATGGCAATAAGGCGGCAGCAGCAGCTACAGCTTGCGATGGAAATCTGGCGGCAGCAGCAGCAGCAGTTA
GCGGCGGCAATGTGGCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28265.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis