Browse Element(s) Details


OsAffx.28281.1.S1_at

Description tigr:9635.m00451
TID=OsAffx.28281.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Skp1 family, dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0515011/11Skp1 family, dimerisation domain containing protein
LOC_Os07g0518011/11SKP1-like protein 1A, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05120OsAffx.28280.1.S1_at11/117+2257844..2259856hypothetical protein
LOC_Os07g05140OsAffx.29313.1.S1_at1/117+2267989..2272456transposon protein, putative, Mutator sub-class
LOC_Os07g05140Os.56216.1.S1_at1/117+2267989..2272456transposon protein, putative, Mutator sub-class
LOC_Os07g05150OsAffx.28281.1.S1_x_at11/117+2284148..2284621Skp1 family, dimerisation domain containing protein
LOC_Os07g05150OsAffx.28281.1.S1_at11/117+2284148..2284621Skp1 family, dimerisation domain containing protein
LOC_Os07g05160OsAffx.16094.1.S1_at11/117+2285162..2285680SKP1-like protein 1A, putative
LOC_Os07g05160OsAffx.28281.1.S1_x_at1/117+2285162..2285680SKP1-like protein 1A, putative
LOC_Os07g05170OsAffx.5216.1.S1_at11/117+2299055..2299690hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007067biological_processmitosis
GO:0007140biological_processmale meiosis
GO:0000151cellular_componentubiquitin ligase complex
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28281.1.S1_at--787--1972Chr07:2309866..2309890 (25 bp)
ACTGCACGACGAACGGGGTGCCTCT
LOC_Os07g05180
OsAffx.28281.1.S1_at--689--1552Chr07:2310063..2310087 (25 bp)
AGCTTGCTGGATTTGTGCTGCCAGC
LOC_Os07g05180
OsAffx.28281.1.S1_at--691--9132Chr07:2310067..2310091 (25 bp)
TGCTGGATTTGTGCTGCCAGCACAC
LOC_Os07g05180
OsAffx.28281.1.S1_at--972--212Chr07:2310073..2310097 (25 bp)
ATTTGTGCTGCCAGCACACGGCGAA
LOC_Os07g05180
OsAffx.28281.1.S1_at--409--9112Chr07:2310078..2310102 (25 bp)
TGCTGCCAGCACACGGCGAACCTGA
LOC_Os07g05180
OsAffx.28281.1.S1_at--909--1492Chr07:2310085..2310109 (25 bp)
AGCACACGGCGAACCTGATCAAAGG
LOC_Os07g05180
OsAffx.28281.1.S1_at--524--2172Chr07:2310088..2310112 (25 bp)
ACACGGCGAACCTGATCAAAGGCAA
LOC_Os07g05180
OsAffx.28281.1.S1_at--403--1952Chr07:2310090..2310114 (25 bp)
ACGGCGAACCTGATCAAAGGCAAGT
LOC_Os07g05180
OsAffx.28281.1.S1_at--1152--8372Chr07:2310092..2310116 (25 bp)
GGCGAACCTGATCAAAGGCAAGTCG
LOC_Os07g05180
OsAffx.28281.1.S1_at--760--4092Chr07:2310094..2310118 (25 bp)
CGAACCTGATCAAAGGCAAGTCGCC
LOC_Os07g05180
OsAffx.28281.1.S1_at--943--3472Chr07:2310128..2310152 (25 bp)
CAGGAAGGAGTTTGGGATCAAGAAC
LOC_Os07g05180
Target Sequence 
ACTGCACGACGAACGGGGTGCCTCTCCCCAACGTCGCCTCCAAGGTCCTCGCCAAGGTCATCGAATACTGCNTCAAGCAC
GCCGCCGCCGNGGAGGANGAGGAGAAGGANCTGAAGAGCTTCGACGCCGAGTTCATNNNCGANGTGGACAAGAACATGCT
GTACGNCNTGCTCCTGGCGTCCAATTTCNTGAACATCAAGAGCTTGCTGGATTTGTGCTGCCAGCACACGGCGAACCTGA
TCAAAGGCAAGTCGCCGGAGCAGATCAGGAAGGAGTTTGGGATCAAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28281.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis