Browse Element(s) Details


OsAffx.28284.1.S1_at

Description tigr:9635.m00466
TID=OsAffx.28284.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0530011/11hypothetical protein
LOC_Os10g364703/11methionine aminopeptidase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05280NANA7+2380861..2384823retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05290Os.33267.1.S1_at11/117+2388007..2389172expressed protein
LOC_Os07g05300OsAffx.28284.1.S1_at11/117+2409271..2410643hypothetical protein
LOC_Os07g05310OsAffx.28285.1.S1_at10/117+2418863..2419798hypothetical protein
LOC_Os07g05320OsAffx.28286.1.S1_at11/117+2426510..2427848expressed protein
LOC_Os07g05330OsAffx.23366.1.S1_at1/117+2428212..2432983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g05330OsAffx.23366.2.S1_s_at1/117+2428212..2432983transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0016485biological_processprotein processing
GO:0031365biological_processN-terminal protein amino acid modification
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004239molecular_functionmethionyl aminopeptidase activity
GO:0008235molecular_functionmetalloexopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28284.1.S1_at--113--5192Chr10:19185839..19185863 (25 bp)
GCAATAGGTGATTCCTTCAGTTTCA
LOC_Os10g36470
OsAffx.28284.1.S1_at--177--4311Chr07:2409527..2409551 (25 bp)
CCTTCAGTTTCAGTCTAGTGTTAGT
LOC_Os07g05300
OsAffx.28284.1.S1_at--336--10071Chr07:2409512..2409536 (25 bp)
TAGTGTTAGTAGCAATCTACCTTGC
LOC_Os07g05300
OsAffx.28284.1.S1_at--640--3052Chr10:19185880..19185904 (25 bp)
AATCTACCTTGCTTTATGCCTTGGT
LOC_Os10g36470
OsAffx.28284.1.S1_at--490--9191Chr07:2409483..2409507 (25 bp)
TGCCTTGGTTATGTTTCTCTTCAGT
LOC_Os07g05300
OsAffx.28284.1.S1_at--1109--6831Chr07:2409471..2409495 (25 bp)
GTTTCTCTTCAGTTATTATTTCTAA
LOC_Os07g05300
OsAffx.28284.1.S1_at--377--732Chr10:19185925..19185949 (25 bp)
ATGATTGCTCATTTATCTGAAGTTT
LOC_Os10g36470
OsAffx.28284.1.S1_at--661--2932Chr07:2409388..2409412 (25 bp)
AAGGCAAGTATCTGCACAGGACCAC
LOC_Os07g05300
OsAffx.28284.1.S1_at--43--9491Chr07:2409378..2409402 (25 bp)
TCTGCACAGGACCACAGGTATACAT
LOC_Os07g05300
OsAffx.28284.1.S1_at--639--10491Chr07:2409312..2409336 (25 bp)
TTAAGGCCTAACTGGATCCTGGCGT
LOC_Os07g05300
OsAffx.28284.1.S1_at--1000--9791Chr07:2409304..2409328 (25 bp)
TAACTGGATCCTGGCGTCCTGCAAT
LOC_Os07g05300
Target Sequence 
GCAATAGGTGATTCCTTCAGTTTCAGTCTAGTGTTAGTAGCAATCTACCTTGCTTTATGCCTTGGTTATGTTTCTCTTCA
GTTATTATTTCTAAACTCCAAACATATGATTGCTCATTTATCTGAAGTTTTTGTTACATTTATTGGAACATCAAGGCAAG
TATCTGCACAGGACCACAGGTATACATACCAAATATCAAATATGAGTATTCGTCATAAAATAGAAGAATTAAGGCCTAAC
TGGATCCTGGCGTCCTGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis