Browse Element(s) Details


OsAffx.28285.1.S1_at

Description tigr:9635.m00467
TID=OsAffx.28285.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0531010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05300OsAffx.28284.1.S1_at11/117+2409271..2410643hypothetical protein
LOC_Os07g05310OsAffx.28285.1.S1_at10/117+2418863..2419798hypothetical protein
LOC_Os07g05320OsAffx.28286.1.S1_at11/117+2426510..2427848expressed protein
LOC_Os07g05330OsAffx.23366.1.S1_at1/117+2428212..2432983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g05330OsAffx.23366.2.S1_s_at1/117+2428212..2432983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g05340OsAffx.10048.1.S1_x_at1/117+2440236..2441160retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28285.1.S1_at--326--10651Chr07:2419689..2419713 (25 bp)
TTCGCCACCTCTCCATGCTTGAGAG
LOC_Os07g05310
OsAffx.28285.1.S1_at--263--4711NONE
GCGGCGAGATGGCTCTCACACAACG
NONE
OsAffx.28285.1.S1_at--455--8491Chr07:2418971..2418995 (25 bp)
TGGCTCTCACACAACGCCGATTCGA
LOC_Os07g05310
OsAffx.28285.1.S1_at--858--4491Chr07:2418956..2418980 (25 bp)
GCCGATTCGACCGTTCGACTCAATA
LOC_Os07g05310
OsAffx.28285.1.S1_at--844--5811Chr07:2418948..2418972 (25 bp)
GACCGTTCGACTCAATATTCCTTAC
LOC_Os07g05310
OsAffx.28285.1.S1_at--940--4031Chr07:2418945..2418969 (25 bp)
CGTTCGACTCAATATTCCTTACGGG
LOC_Os07g05310
OsAffx.28285.1.S1_at--109--10671Chr07:2418931..2418955 (25 bp)
TTCCTTACGGGCTTGTCCCAGAGGA
LOC_Os07g05310
OsAffx.28285.1.S1_at--639--10471Chr07:2418927..2418951 (25 bp)
TTACGGGCTTGTCCCAGAGGATAAA
LOC_Os07g05310
OsAffx.28285.1.S1_at--433--6171Chr07:2418911..2418935 (25 bp)
GAGGATAAACCAGTGCATTCTCCAT
LOC_Os07g05310
OsAffx.28285.1.S1_at--218--2651Chr07:2418904..2418928 (25 bp)
AACCAGTGCATTCTCCATAAAAGTG
LOC_Os07g05310
OsAffx.28285.1.S1_at--993--9471Chr07:2418893..2418917 (25 bp)
TCTCCATAAAAGTGGCCAGCTAGCT
LOC_Os07g05310
Target Sequence 
TTCGCCACCTCTCCATGCTTGAGAGGGGTCGCCGCCCTGGAGGGAGCCCCGTCACCGCCATCATGGCTCGCCCGCCGGCT
TTCCAGCGGCGGCGAGATGGCTCTCACACAACGCCGATTCGACCGTTCGACTCAATATTCCTTACGGGCTTGTCCCAGAG
GATAAACCAGTGCATTCTCCATAAAAGTGGCCAGCTAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28285.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis