Browse Element(s) Details


OsAffx.28304.1.S1_at

Description tigr:9635.m00563
TID=OsAffx.28304.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0624011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06175OsAffx.28306.1.S1_x_at11/117+3009772..3012463Peroxidase family protein
LOC_Os07g06175OsAffx.28306.1.S1_at11/117+3009772..3012463Peroxidase family protein
LOC_Os07g06190Os.27778.1.S1_a_at8/117+3014755..3022564Peroxidase family protein, expressed
LOC_Os07g06190OsAffx.11103.1.S1_x_at6/117+3014755..3022564Peroxidase family protein, expressed
LOC_Os07g06190OsAffx.11103.1.S1_at4/117+3014755..3022564Peroxidase family protein, expressed
LOC_Os07g06190OsAffx.17249.1.S1_at1/117+3014755..3022564Peroxidase family protein, expressed
LOC_Os07g06190Os.56899.1.S1_at1/117+3014755..3022564Peroxidase family protein, expressed
LOC_Os07g06199OsAffx.28302.1.S1_at11/117+3024274..3025358hypothetical protein
LOC_Os07g06210NANA7+3025855..3026151hypothetical protein
LOC_Os07g06220NANA7+3028704..3029373hypothetical protein
LOC_Os07g06230NANA7+3029710..3030005hypothetical protein
LOC_Os07g06240OsAffx.28304.1.S1_at11/117+3032674..3033554hypothetical protein
LOC_Os07g06250NANA7+3034679..3035200hypothetical protein
LOC_Os07g06262NANA7+3045275..3048216retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g06274NANA7+3048533..3054628retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g06286OsAffx.28306.1.S1_at11/117+3056736..3057707Peroxidase family protein
LOC_Os07g06286OsAffx.28306.1.S1_x_at11/117+3056736..3057707Peroxidase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28304.1.S1_at--484--1793Chr07:3077557..3077581 (25 bp)
ACCGCTTCCGTCGTAGTCGCTGTTG
NONE
OsAffx.28304.1.S1_at--275--10073Chr07:3077570..3077594 (25 bp)
TAGTCGCTGTTGTCGCCGTGCACAT
NONE
OsAffx.28304.1.S1_at--214--9251Chr07:3032798..3032822 (25 bp)
TCCTAGATCTCGGTCGTCGACAAGA
LOC_Os07g06240
OsAffx.28304.1.S1_at--110--2933Chr07:3078144..3078168 (25 bp)
AAGGCTCCCAAACGAGACAGGACCA
NONE
OsAffx.28304.1.S1_at--305--5993Chr07:3078157..3078181 (25 bp)
GAGACAGGACCAGCGAGAGACCAGA
NONE
OsAffx.28304.1.S1_at--569--6013Chr07:3078171..3078195 (25 bp)
GAGAGACCAGAGACGAACCTCCTAG
NONE
OsAffx.28304.1.S1_at--627--5791Chr07:3033345..3033369 (25 bp)
GACGAACCTCCTAGCGAATGTATTG
LOC_Os07g06240
OsAffx.28304.1.S1_at--1056--10073Chr07:3078202..3078226 (25 bp)
TATTGGAAAACCATCGAGACCGGCG
NONE
OsAffx.28304.1.S1_at--900--5973Chr07:3078230..3078254 (25 bp)
GAGAAAGAATCGAAAACCCTAGCGT
NONE
OsAffx.28304.1.S1_at--1030--10634Chr08:24684476..24684986 (25 bp)
TTCCGCTCTTTCCAAAGCTGTAGGA
NONE
OsAffx.28304.1.S1_at--821--7213Chr07:3078297..3078321 (25 bp)
GTCGAAGGCCTTACGAAGATGCTAA
NONE
Target Sequence 
ACCGCTTCCGTCGTAGTCGCTGTTGTCGCCGTGCACATTCGCGCCGCGCCCCTCCCGCCCGTCGTCGGCGCCGCGCCCCT
CCTAGATCTCGGTCGTCGACAAGAGGAGGAAGCTGGAGGAGCAGGGAAGGAGGAGGGGGAGAGAGGTGGGGGAGGAGGAG
GAGAGGGAGGTGGATGGGTGGGTGGAGAGGAGGAGACAGAGGAGAGAGAGGCAGTGGTAGTGCGGGAGGGGGTGGCGGAG
GAGCCTCCTAATCTCCCAAAAGGCTCCCAAACGAGACAGGACCAGCGAGAGACCAGAGACGAACCTCCTAGCGAATGTAT
TGGAAAACCATCGAGACCGGCGAAAGAGAAAGAATCGAAAACCCTAGCGTTCCGCTCTTTCCAAAGCTGTAGGAAACCAA
GAGGACCAGAGAGTCGAAGGCCTTACGAAGATGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28304.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis