Browse Element(s) Details


OsAffx.28306.1.S1_at

Description tigr:9635.m00557
TID=OsAffx.28306.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0628611/11Peroxidase family protein
LOC_Os01g1893011/11Peroxidase family protein
LOC_Os07g0638011/11Peroxidase family protein
LOC_Os07g0617511/11Peroxidase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06240OsAffx.28304.1.S1_at11/117+3032674..3033554hypothetical protein
LOC_Os07g06250NANA7+3034679..3035200hypothetical protein
LOC_Os07g06262NANA7+3045275..3048216retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g06274NANA7+3048533..3054628retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g06286OsAffx.28306.1.S1_at11/117+3056736..3057707Peroxidase family protein
LOC_Os07g06286OsAffx.28306.1.S1_x_at11/117+3056736..3057707Peroxidase family protein
LOC_Os07g06300OsAffx.11103.1.S1_x_at6/117+3059999..3067538Peroxidase family protein
LOC_Os07g06300OsAffx.11103.1.S1_at4/117+3059999..3067538Peroxidase family protein
LOC_Os07g06300Os.27778.1.S1_a_at2/117+3059999..3067538Peroxidase family protein
LOC_Os07g06300Os.56899.1.S1_at1/117+3059999..3067538Peroxidase family protein
LOC_Os07g06300OsAffx.17249.1.S1_at1/117+3059999..3067538Peroxidase family protein
LOC_Os07g06315OsAffx.28302.1.S1_at11/117+3069518..3070602hypothetical protein
LOC_Os07g06325NANA7+3071099..3071395hypothetical protein
LOC_Os07g06335NANA7+3073086..3074553hypothetical protein
LOC_Os07g06345NANA7+3079516..3080037hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009624biological_processresponse to nematode
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28306.1.S1_at--221--10534Chr07:3102011..3102035 (25 bp)
TTCACCATCCGGCAGCTCATCGACA
LOC_Os07g06380
OsAffx.28306.1.S1_at--963--8474Chr07:3102255..3102279 (25 bp)
TGGCGAGGTTCATGCCGGCGTTCGT
LOC_Os07g06380
OsAffx.28306.1.S1_at--1147--9114Chr07:3102288..3102312 (25 bp)
TGCGGCCGGTCAGCGCCCTGGACAA
LOC_Os07g06380
OsAffx.28306.1.S1_at--310--3774Chr07:3102332..3102356 (25 bp)
CTCGACAAGGTGGTCAACTTCAACT
LOC_Os07g06380
OsAffx.28306.1.S1_at--319--5614Chr07:3102335..3102359 (25 bp)
GACAAGGTGGTCAACTTCAACTCGG
LOC_Os07g06380
OsAffx.28306.1.S1_at--1096--2874Chr07:3102338..3102362 (25 bp)
AAGGTGGTCAACTTCAACTCGGACT
LOC_Os07g06380
OsAffx.28306.1.S1_at--821--1054Chr07:3102339..3102363 (25 bp)
AGGTGGTCAACTTCAACTCGGACTG
LOC_Os07g06380
OsAffx.28306.1.S1_at--652--9717Chr07:3102351..3102375 (25 bp)
TCAACTCGGACTGGCAGCTGCTGAC
LOC_Os07g06380
OsAffx.28306.1.S1_at--15--2557Chr07:3102353..3102377 (25 bp)
AACTCGGACTGGCAGCTGCTGACGC
LOC_Os07g06380
OsAffx.28306.1.S1_at--116--1997Chr07:3102354..3102378 (25 bp)
ACTCGGACTGGCAGCTGCTGACGCA
LOC_Os07g06380
OsAffx.28306.1.S1_at--421--2197Chr07:3102414..3102438 (25 bp)
ACAACGCCGCCCTCTGGGACCACGA
LOC_Os07g06380
Target Sequence 
TTCACCATCCGGCAGCTCATCGACANCTTCGCCCGCAAGAACTTCACCGTCGAGGAGCTCGTCGTCCTCTCCGGCGCGCA
CTCCGTCGGCGACGGCCACTGCTCCTCCTTCACCGCCCGCCTCGCCGCGCCGCCCGACCAGATCACNCCNTCCTACCGCA
ACCTGCTCAACTACANGTGCTCCCGCGGCGGCGGCGCCGACCCNGCGGTGGTGAACAACGCCCGCGACGAGGACCTCGCC
ACCGTGGCGAGGTTCATGCCGGCGTTCGTNGGCAAGCTGCGGCCGGTCAGCGCCCTGGACAACACCTACTACCGCAACAA
CCTCGACAAGGTGGTCAACTTCAACTCGGACTGGCAGCTGCTGACGCAGGACGAGGCGCGCGGCCACGTCCNCGAGTACG
CCGACAACGCCGCCCTCTGGGACCACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28306.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis